Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FREM3P0C091 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
FREM3P0C091 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FREM3P0C091 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.04■□□□□ 0.16
FREM3P0C091 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
FREM3P0C091 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
FREM3P0C091 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FREM3P0C091 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
FREM3P0C091 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.04■□□□□ 0.16
FREM3P0C091 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
FREM3P0C091 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
FREM3P0C091 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
FREM3P0C091 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.04■□□□□ 0.16
FREM3P0C091 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.04■□□□□ 0.16
FREM3P0C091 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
FREM3P0C091 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.04■□□□□ 0.16
FREM3P0C091 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
FREM3P0C091 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
FREM3P0C091 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
FREM3P0C091 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.04■□□□□ 0.16
FREM3P0C091 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
FREM3P0C091 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
FREM3P0C091 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FREM3P0C091 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
FREM3P0C091 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
FREM3P0C091 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
FREM3P0C091 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.03■□□□□ 0.16
FREM3P0C091 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.03■□□□□ 0.16
FREM3P0C091 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
FREM3P0C091 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
FREM3P0C091 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
FREM3P0C091 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.03■□□□□ 0.16
FREM3P0C091 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
FREM3P0C091 AL662844.1-201ENST00000546340 181 ntBASIC16.03■□□□□ 0.16
FREM3P0C091 AC109462.3-201ENST00000573934 613 ntBASIC16.03■□□□□ 0.16
FREM3P0C091 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 AC011467.2-201ENST00000598425 242 ntBASIC16.03■□□□□ 0.16
FREM3P0C091 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.03■□□□□ 0.16
FREM3P0C091 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.03■□□□□ 0.16
FREM3P0C091 AC004817.3-201ENST00000602957 2129 ntBASIC16.03■□□□□ 0.16
FREM3P0C091 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC16.03■□□□□ 0.16
FREM3P0C091 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
FREM3P0C091 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
FREM3P0C091 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.03■□□□□ 0.16
FREM3P0C091 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.03■□□□□ 0.16
FREM3P0C091 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.03■□□□□ 0.16
FREM3P0C091 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
FREM3P0C091 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.03■□□□□ 0.16
FREM3P0C091 AC012317.2-201ENST00000623305 2251 ntBASIC16.03■□□□□ 0.16
FREM3P0C091 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
FREM3P0C091 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.03■□□□□ 0.16
FREM3P0C091 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.03■□□□□ 0.16
FREM3P0C091 AC009533.2-201ENST00000543664 586 ntBASIC16.03■□□□□ 0.16
FREM3P0C091 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.03■□□□□ 0.16
FREM3P0C091 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
FREM3P0C091 MIR7706-201ENST00000613747 67 ntBASIC16.03■□□□□ 0.16
FREM3P0C091 AL355877.3-201ENST00000622820 899 ntBASIC16.03■□□□□ 0.16
FREM3P0C091 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FREM3P0C091 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
FREM3P0C091 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
FREM3P0C091 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FREM3P0C091 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FREM3P0C091 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
FREM3P0C091 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.02■□□□□ 0.16
FREM3P0C091 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
FREM3P0C091 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.02■□□□□ 0.16
FREM3P0C091 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FREM3P0C091 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FREM3P0C091 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.02■□□□□ 0.16
FREM3P0C091 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
FREM3P0C091 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
FREM3P0C091 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.02■□□□□ 0.16
FREM3P0C091 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.02■□□□□ 0.16
FREM3P0C091 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.02■□□□□ 0.16
FREM3P0C091 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.02■□□□□ 0.16
FREM3P0C091 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
FREM3P0C091 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.02■□□□□ 0.16
FREM3P0C091 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.02■□□□□ 0.16
FREM3P0C091 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
FREM3P0C091 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms