Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 AC105917.1-201ENST00000506637 2539 ntBASIC13.32□□□□□ -0.28
HLA-DQA1P01909 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 RHOD-202ENST00000532559 538 ntTSL 3 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 AC133041.1-202ENST00000642053 222 ntBASIC13.32□□□□□ -0.28
HLA-DQA1P01909 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DQA1P01909 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 TK2-221ENST00000620035 5060 ntTSL 2 BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 KRT8P41-201ENST00000533985 1514 ntBASIC13.31□□□□□ -0.28
HLA-DQA1P01909 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 ID1-201ENST00000376105 1233 ntBASIC13.31□□□□□ -0.28
HLA-DQA1P01909 AC069152.1-201ENST00000438030 544 ntBASIC13.31□□□□□ -0.28
HLA-DQA1P01909 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 AC092368.3-202ENST00000574180 1591 ntBASIC13.31□□□□□ -0.28
HLA-DQA1P01909 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 AC092850.2-201ENST00000623821 2697 ntBASIC13.31□□□□□ -0.28
HLA-DQA1P01909 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC13.31□□□□□ -0.28
HLA-DQA1P01909 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DQA1P01909 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DQA1P01909 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DQA1P01909 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DQA1P01909 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC13.3□□□□□ -0.28
HLA-DQA1P01909 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
HLA-DQA1P01909 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC13.3□□□□□ -0.28
HLA-DQA1P01909 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DQA1P01909 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC13.3□□□□□ -0.28
HLA-DQA1P01909 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DQA1P01909 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DQA1P01909 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DQA1P01909 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DQA1P01909 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HLA-DQA1P01909 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms