Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDGFBP01127 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDGFBP01127 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
PDGFBP01127 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDGFBP01127 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PDGFBP01127 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDGFBP01127 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
PDGFBP01127 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.65■□□□□ 0.42
PDGFBP01127 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDGFBP01127 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
PDGFBP01127 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.64■□□□□ 0.41
PDGFBP01127 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.64■□□□□ 0.41
PDGFBP01127 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
PDGFBP01127 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PDGFBP01127 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.64■□□□□ 0.41
PDGFBP01127 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PDGFBP01127 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.64■□□□□ 0.41
PDGFBP01127 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
PDGFBP01127 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.64■□□□□ 0.41
PDGFBP01127 AC140878.1-201ENST00000565277 250 ntBASIC17.64■□□□□ 0.41
PDGFBP01127 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.64■□□□□ 0.41
PDGFBP01127 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC17.64■□□□□ 0.41
PDGFBP01127 SRP9-204ENST00000619790 377 ntTSL 2 BASIC17.64■□□□□ 0.41
PDGFBP01127 AC008677.1-201ENST00000519230 1561 ntBASIC17.64■□□□□ 0.41
PDGFBP01127 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PDGFBP01127 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PDGFBP01127 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
PDGFBP01127 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.64■□□□□ 0.41
PDGFBP01127 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PDGFBP01127 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
PDGFBP01127 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PDGFBP01127 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PDGFBP01127 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
PDGFBP01127 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.63■□□□□ 0.41
PDGFBP01127 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
PDGFBP01127 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDGFBP01127 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PDGFBP01127 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PDGFBP01127 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDGFBP01127 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PDGFBP01127 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PDGFBP01127 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDGFBP01127 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.63■□□□□ 0.41
PDGFBP01127 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.63■□□□□ 0.41
PDGFBP01127 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.63■□□□□ 0.41
PDGFBP01127 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.63■□□□□ 0.41
PDGFBP01127 AL512638.1-201ENST00000457493 794 ntBASIC17.63■□□□□ 0.41
PDGFBP01127 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.63■□□□□ 0.41
PDGFBP01127 SERBP1P5-201ENST00000510079 1181 ntBASIC17.63■□□□□ 0.41
PDGFBP01127 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.63■□□□□ 0.41
PDGFBP01127 AC243562.1-201ENST00000560672 389 ntBASIC17.63■□□□□ 0.41
PDGFBP01127 STK25P1-201ENST00000585406 838 ntBASIC17.63■□□□□ 0.41
PDGFBP01127 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.63■□□□□ 0.41
PDGFBP01127 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDGFBP01127 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PDGFBP01127 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
PDGFBP01127 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDGFBP01127 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDGFBP01127 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDGFBP01127 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.63■□□□□ 0.41
PDGFBP01127 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC17.63■□□□□ 0.41
PDGFBP01127 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
PDGFBP01127 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDGFBP01127 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.62■□□□□ 0.41
PDGFBP01127 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PDGFBP01127 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.62■□□□□ 0.41
PDGFBP01127 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
PDGFBP01127 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.62■□□□□ 0.41
PDGFBP01127 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PDGFBP01127 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
PDGFBP01127 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.62■□□□□ 0.41
PDGFBP01127 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.62■□□□□ 0.41
PDGFBP01127 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
PDGFBP01127 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
PDGFBP01127 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PDGFBP01127 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PDGFBP01127 COX5BP8-201ENST00000416911 349 ntBASIC17.62■□□□□ 0.41
PDGFBP01127 ATP5G2P4-201ENST00000442175 420 ntBASIC17.62■□□□□ 0.41
PDGFBP01127 RN7SL692P-201ENST00000464677 288 ntBASIC17.62■□□□□ 0.41
PDGFBP01127 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PDGFBP01127 FAM86C2P-203ENST00000528684 1004 ntBASIC17.62■□□□□ 0.41
PDGFBP01127 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PDGFBP01127 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PDGFBP01127 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.62■□□□□ 0.41
PDGFBP01127 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.62■□□□□ 0.41
PDGFBP01127 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.62■□□□□ 0.41
PDGFBP01127 AL662799.1-202ENST00000614205 422 ntBASIC17.62■□□□□ 0.41
PDGFBP01127 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
PDGFBP01127 AL358472.5-202ENST00000641448 1267 ntBASIC17.62■□□□□ 0.41
PDGFBP01127 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.62■□□□□ 0.41
PDGFBP01127 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PDGFBP01127 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PDGFBP01127 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PDGFBP01127 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PDGFBP01127 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
PDGFBP01127 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC17.62■□□□□ 0.41
PDGFBP01127 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC17.62■□□□□ 0.41
PDGFBP01127 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PDGFBP01127 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PDGFBP01127 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms