Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 COX5BP2-201ENST00000392354 334 ntBASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 HCG4P8-203ENST00000443049 980 ntBASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 AC092329.2-201ENST00000598402 547 ntBASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 Z69720.1-201ENST00000601483 472 ntBASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 LINC01451-201ENST00000623792 534 ntBASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 HLA-J-201ENST00000462773 1622 ntBASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4BQ9Y4P1 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 KRT17P6-201ENST00000453795 1220 ntBASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 KRT18P56-201ENST00000507275 550 ntBASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4BQ9Y4P1 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4BQ9Y4P1 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4BQ9Y4P1 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4BQ9Y4P1 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4BQ9Y4P1 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4BQ9Y4P1 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4BQ9Y4P1 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.72■□□□□ 0.27
ATG4BQ9Y4P1 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.72■□□□□ 0.27
ATG4BQ9Y4P1 PP12613-201ENST00000424958 2230 ntBASIC16.72■□□□□ 0.27
ATG4BQ9Y4P1 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
ATG4BQ9Y4P1 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4BQ9Y4P1 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4BQ9Y4P1 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.72■□□□□ 0.27
ATG4BQ9Y4P1 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.72■□□□□ 0.27
ATG4BQ9Y4P1 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4BQ9Y4P1 IGHV3-47-201ENST00000425060 335 ntBASIC16.72■□□□□ 0.27
ATG4BQ9Y4P1 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
ATG4BQ9Y4P1 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.72■□□□□ 0.27
ATG4BQ9Y4P1 AP000867.3-201ENST00000524675 377 ntBASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms