Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 RNF165-205ENST00000588679 2904 ntBASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 AL161938.1-201ENST00000569833 2180 ntBASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 AC112777.1-201ENST00000540175 1423 ntBASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 RCN1P2-201ENST00000398357 915 ntBASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 RPSAP43-201ENST00000402237 625 ntBASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 RAB17-203ENST00000409576 466 ntTSL 3 BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 IMP4-203ENST00000409935 958 ntTSL 5 BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 PMS2P2-201ENST00000425039 1128 ntBASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 AL591424.1-201ENST00000442569 1213 ntBASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 INTS4P1-201ENST00000438455 1935 ntBASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 SNAI3-AS1-205ENST00000568633 2096 ntBASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 RPS2P1-201ENST00000434010 821 ntBASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 ASL-204ENST00000395331 1538 ntTSL 5 BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 AL356309.3-201ENST00000624132 1934 ntBASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NOTCH3Q9UM47 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 UROS-202ENST00000368778 1556 ntTSL 2 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 RPS8P6-201ENST00000426177 609 ntBASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 THAP5-204ENST00000438865 868 ntTSL 2 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 AC034105.1-201ENST00000563488 319 ntBASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NOTCH3Q9UM47 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms