Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 CCS-201ENST00000310190 942 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 MIR574-201ENST00000385209 96 ntBASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 AC005336.2-201ENST00000593183 939 ntBASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 AC008687.5-201ENST00000593746 558 ntBASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 AC008608.2-201ENST00000606089 416 ntBASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 ABBA01031661.1-201ENST00000634362 1253 ntBASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 NARF-204ENST00000390006 1766 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 AC108860.2-201ENST00000562760 2183 ntBASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 PP12613-201ENST00000424958 2230 ntBASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 RCN1P2-201ENST00000398357 915 ntBASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 PMS2P1-201ENST00000431037 1228 ntBASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 AF186996.4-201ENST00000467186 377 ntBASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 SLC25A1P1-201ENST00000528351 927 ntBASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 IRF8-202ENST00000562492 946 ntTSL 3 BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
CCDC144BQ3MJ40 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 SLC25A6P5-201ENST00000435663 894 ntBASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 AC068472.1-201ENST00000474589 881 ntBASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CCDC144BQ3MJ40 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCDC144BQ3MJ40 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC20.52■□□□□ 0.87
CCDC144BQ3MJ40 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCDC144BQ3MJ40 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC144BQ3MJ40 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms