Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HOXA1P49639 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HOXA1P49639 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXA1P49639 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXA1P49639 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXA1P49639 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXA1P49639 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC14.74□□□□□ -0.05
HOXA1P49639 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC14.74□□□□□ -0.05
HOXA1P49639 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HOXA1P49639 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC14.74□□□□□ -0.05
HOXA1P49639 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXA1P49639 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.74□□□□□ -0.05
HOXA1P49639 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC14.74□□□□□ -0.05
HOXA1P49639 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXA1P49639 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HOXA1P49639 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC14.74□□□□□ -0.05
HOXA1P49639 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
HOXA1P49639 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC14.74□□□□□ -0.05
HOXA1P49639 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
HOXA1P49639 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC14.73□□□□□ -0.05
HOXA1P49639 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.73□□□□□ -0.05
HOXA1P49639 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC14.73□□□□□ -0.05
HOXA1P49639 AL096828.2-201ENST00000567259 1965 ntBASIC14.73□□□□□ -0.05
HOXA1P49639 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
HOXA1P49639 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC14.73□□□□□ -0.05
HOXA1P49639 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC14.73□□□□□ -0.05
HOXA1P49639 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
HOXA1P49639 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC14.73□□□□□ -0.05
HOXA1P49639 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 ID1-201ENST00000376105 1233 ntBASIC14.73□□□□□ -0.05
HOXA1P49639 ELP6-205ENST00000439305 880 ntTSL 2 BASIC14.73□□□□□ -0.05
HOXA1P49639 AC008040.2-201ENST00000461049 708 ntBASIC14.73□□□□□ -0.05
HOXA1P49639 B3GAT3P1-201ENST00000471720 806 ntBASIC14.73□□□□□ -0.05
HOXA1P49639 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC14.73□□□□□ -0.05
HOXA1P49639 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC14.73□□□□□ -0.05
HOXA1P49639 EMC9-206ENST00000560403 872 ntTSL 2 BASIC14.73□□□□□ -0.05
HOXA1P49639 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC14.73□□□□□ -0.05
HOXA1P49639 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC14.73□□□□□ -0.05
HOXA1P49639 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC14.73□□□□□ -0.05
HOXA1P49639 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.73□□□□□ -0.05
HOXA1P49639 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC14.73□□□□□ -0.05
HOXA1P49639 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC14.73□□□□□ -0.05
HOXA1P49639 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
HOXA1P49639 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC14.73□□□□□ -0.05
HOXA1P49639 AC034236.2-201ENST00000606662 1610 ntBASIC14.73□□□□□ -0.05
HOXA1P49639 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
HOXA1P49639 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
HOXA1P49639 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC14.73□□□□□ -0.05
HOXA1P49639 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC14.73□□□□□ -0.05
HOXA1P49639 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXA1P49639 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC14.72□□□□□ -0.05
HOXA1P49639 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.72□□□□□ -0.05
HOXA1P49639 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC14.72□□□□□ -0.05
HOXA1P49639 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXA1P49639 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
HOXA1P49639 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXA1P49639 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXA1P49639 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.72□□□□□ -0.05
HOXA1P49639 TSPY26P-202ENST00000565928 3884 ntBASIC14.72□□□□□ -0.05
HOXA1P49639 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXA1P49639 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
HOXA1P49639 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HOXA1P49639 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HOXA1P49639 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXA1P49639 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HOXA1P49639 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC14.72□□□□□ -0.05
HOXA1P49639 MIR564-202ENST00000385049 94 ntBASIC14.72□□□□□ -0.05
HOXA1P49639 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC14.72□□□□□ -0.05
HOXA1P49639 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC14.72□□□□□ -0.05
HOXA1P49639 ADM-205ENST00000528544 586 ntTSL 2 BASIC14.72□□□□□ -0.05
HOXA1P49639 AF186192.3-201ENST00000583427 947 ntBASIC14.72□□□□□ -0.05
HOXA1P49639 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC14.72□□□□□ -0.05
HOXA1P49639 AC130371.2-201ENST00000619443 611 ntBASIC14.72□□□□□ -0.05
HOXA1P49639 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HOXA1P49639 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC14.72□□□□□ -0.05
HOXA1P49639 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXA1P49639 NARF-204ENST00000390006 1766 ntTSL 2 BASIC14.72□□□□□ -0.05
HOXA1P49639 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms