Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN9P43378 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN9P43378 AL049757.1-201ENST00000616842 1596 ntBASIC18.38■□□□□ 0.53
PTPN9P43378 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18.38■□□□□ 0.53
PTPN9P43378 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.38■□□□□ 0.53
PTPN9P43378 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN9P43378 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN9P43378 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN9P43378 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN9P43378 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN9P43378 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN9P43378 POM121L3P-201ENST00000419331 1163 ntBASIC18.38■□□□□ 0.53
PTPN9P43378 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN9P43378 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.38■□□□□ 0.53
PTPN9P43378 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.38■□□□□ 0.53
PTPN9P43378 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.38■□□□□ 0.53
PTPN9P43378 AC114341.1-201ENST00000618070 349 ntBASIC18.38■□□□□ 0.53
PTPN9P43378 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
PTPN9P43378 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN9P43378 INTS4P1-201ENST00000438455 1935 ntBASIC18.38■□□□□ 0.53
PTPN9P43378 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN9P43378 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
PTPN9P43378 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN9P43378 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.38■□□□□ 0.53
PTPN9P43378 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.38■□□□□ 0.53
PTPN9P43378 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
PTPN9P43378 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN9P43378 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN9P43378 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN9P43378 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN9P43378 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
PTPN9P43378 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN9P43378 SIRPAP1-201ENST00000448467 1770 ntBASIC18.37■□□□□ 0.53
PTPN9P43378 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
PTPN9P43378 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN9P43378 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN9P43378 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN9P43378 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.37■□□□□ 0.53
PTPN9P43378 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN9P43378 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN9P43378 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.37■□□□□ 0.53
PTPN9P43378 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
PTPN9P43378 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN9P43378 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN9P43378 MYCLP1-201ENST00000372451 1075 ntBASIC18.37■□□□□ 0.53
PTPN9P43378 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.37■□□□□ 0.53
PTPN9P43378 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
PTPN9P43378 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.37■□□□□ 0.53
PTPN9P43378 AC096582.2-201ENST00000510860 516 ntBASIC18.37■□□□□ 0.53
PTPN9P43378 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.37■□□□□ 0.53
PTPN9P43378 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.37■□□□□ 0.53
PTPN9P43378 AC109462.3-201ENST00000573934 613 ntBASIC18.37■□□□□ 0.53
PTPN9P43378 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.37■□□□□ 0.53
PTPN9P43378 AL139327.4-201ENST00000612362 153 ntBASIC18.37■□□□□ 0.53
PTPN9P43378 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN9P43378 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.37■□□□□ 0.53
PTPN9P43378 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.37■□□□□ 0.53
PTPN9P43378 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN9P43378 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN9P43378 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN9P43378 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN9P43378 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.37■□□□□ 0.53
PTPN9P43378 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.37■□□□□ 0.53
PTPN9P43378 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN9P43378 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN9P43378 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.37■□□□□ 0.53
PTPN9P43378 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN9P43378 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.37■□□□□ 0.53
PTPN9P43378 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN9P43378 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.37■□□□□ 0.53
PTPN9P43378 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTPN9P43378 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.36■□□□□ 0.53
PTPN9P43378 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTPN9P43378 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTPN9P43378 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTPN9P43378 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.36■□□□□ 0.53
PTPN9P43378 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTPN9P43378 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18.36■□□□□ 0.53
PTPN9P43378 LYSMD4-203ENST00000378904 2122 ntBASIC18.36■□□□□ 0.53
PTPN9P43378 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PTPN9P43378 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
PTPN9P43378 RCN1P2-201ENST00000398357 915 ntBASIC18.36■□□□□ 0.53
PTPN9P43378 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PTPN9P43378 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PTPN9P43378 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
PTPN9P43378 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTPN9P43378 IGHV3-52-201ENST00000519770 353 ntBASIC18.36■□□□□ 0.53
PTPN9P43378 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.36■□□□□ 0.53
PTPN9P43378 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.36■□□□□ 0.53
PTPN9P43378 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.36■□□□□ 0.53
PTPN9P43378 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
PTPN9P43378 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.36■□□□□ 0.53
PTPN9P43378 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
PTPN9P43378 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
PTPN9P43378 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.36■□□□□ 0.53
PTPN9P43378 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTPN9P43378 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
PTPN9P43378 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTPN9P43378 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.36■□□□□ 0.53
PTPN9P43378 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms