Protein–RNA interactions for Protein: Q9Y5F2

PCDHB11, Protocadherin beta-11, humanhuman

Predictions only

Length 797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11Q9Y5F2 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.39■□□□□ 0.37
PCDHB11Q9Y5F2 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.39■□□□□ 0.37
PCDHB11Q9Y5F2 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.39■□□□□ 0.37
PCDHB11Q9Y5F2 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.39■□□□□ 0.37
PCDHB11Q9Y5F2 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.39■□□□□ 0.37
PCDHB11Q9Y5F2 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB11Q9Y5F2 BX640515.1-201ENST00000617215 977 ntBASIC17.39■□□□□ 0.37
PCDHB11Q9Y5F2 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB11Q9Y5F2 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB11Q9Y5F2 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.39■□□□□ 0.37
PCDHB11Q9Y5F2 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB11Q9Y5F2 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB11Q9Y5F2 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDHB11Q9Y5F2 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.39■□□□□ 0.37
PCDHB11Q9Y5F2 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB11Q9Y5F2 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB11Q9Y5F2 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB11Q9Y5F2 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB11Q9Y5F2 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 MRPL3P1-201ENST00000400109 1033 ntBASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB11Q9Y5F2 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 GNAS-203ENST00000306120 1878 ntBASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 POM121L3P-201ENST00000419331 1163 ntBASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 AC068472.1-201ENST00000474589 881 ntBASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 AP001005.1-201ENST00000571755 1248 ntBASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 HLA-A-201ENST00000376802 1334 ntBASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 AC134043.2-201ENST00000624206 2238 ntBASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PCDHB11Q9Y5F2 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHB11Q9Y5F2 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
PCDHB11Q9Y5F2 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHB11Q9Y5F2 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHB11Q9Y5F2 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms