Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
CHMP4CQ96CF2 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CHMP4CQ96CF2 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC21.14■□□□□ 0.98
CHMP4CQ96CF2 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
CHMP4CQ96CF2 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CHMP4CQ96CF2 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CHMP4CQ96CF2 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CHMP4CQ96CF2 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CHMP4CQ96CF2 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC21.14■□□□□ 0.98
CHMP4CQ96CF2 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CHMP4CQ96CF2 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CHMP4CQ96CF2 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CHMP4CQ96CF2 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CHMP4CQ96CF2 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CHMP4CQ96CF2 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC21.14■□□□□ 0.98
CHMP4CQ96CF2 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CHMP4CQ96CF2 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC21.14■□□□□ 0.97
CHMP4CQ96CF2 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC21.14■□□□□ 0.97
CHMP4CQ96CF2 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC21.14■□□□□ 0.97
CHMP4CQ96CF2 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC21.14■□□□□ 0.97
CHMP4CQ96CF2 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CHMP4CQ96CF2 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC21.14■□□□□ 0.97
CHMP4CQ96CF2 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC21.14■□□□□ 0.97
CHMP4CQ96CF2 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CHMP4CQ96CF2 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC21.14■□□□□ 0.97
CHMP4CQ96CF2 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC21.14■□□□□ 0.97
CHMP4CQ96CF2 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CHMP4CQ96CF2 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC21.14■□□□□ 0.97
CHMP4CQ96CF2 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
CHMP4CQ96CF2 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CHMP4CQ96CF2 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CHMP4CQ96CF2 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC21.14■□□□□ 0.97
CHMP4CQ96CF2 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CHMP4CQ96CF2 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CHMP4CQ96CF2 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 NUS1P2-201ENST00000417358 873 ntBASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 BET1L-206ENST00000486280 665 ntTSL 3 BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 AC011840.4-201ENST00000578471 627 ntBASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 RN7SL510P-201ENST00000581311 263 ntBASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 IFNL4P1-201ENST00000607083 540 ntBASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 AC006116.8-202ENST00000587620 1550 ntBASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 NSUN5P1-202ENST00000421140 1535 ntBASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 NSUN5P2-203ENST00000457352 1529 ntBASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 CD276-203ENST00000537340 2439 ntTSL 2 BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP4CQ96CF2 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 EMBP1-201ENST00000458200 901 ntBASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 AC012615.1-201ENST00000565797 1299 ntBASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms