Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 KRT18P61-201ENST00000585825 1298 ntBASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 GAS2L1P2-201ENST00000436355 1356 ntBASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28AQ8IWP9 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC28AQ8IWP9 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC28AQ8IWP9 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
CCDC28AQ8IWP9 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
CCDC28AQ8IWP9 AC008556.1-201ENST00000610908 2040 ntBASIC14.83□□□□□ -0.03
CCDC28AQ8IWP9 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC28AQ8IWP9 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC28AQ8IWP9 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC28AQ8IWP9 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC28AQ8IWP9 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 AL162430.1-201ENST00000480705 870 ntBASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 BID-214ENST00000617586 542 ntTSL 5 BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 AC008694.1-202ENST00000636953 945 ntBASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 ZNF815P-204ENST00000434898 1737 ntBASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28AQ8IWP9 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28AQ8IWP9 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms