Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 AP002414.2-201ENST00000591780 3365 ntBASIC11.05□□□□□ -0.64
LINC00643Q86TS7 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC11.05□□□□□ -0.64
LINC00643Q86TS7 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 KRT8P45-201ENST00000414328 1447 ntBASIC11.04□□□□□ -0.64
LINC00643Q86TS7 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 AC139795.1-202ENST00000500444 432 ntBASIC11.04□□□□□ -0.64
LINC00643Q86TS7 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
LINC00643Q86TS7 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 SYT6-210ENST00000641643 1587 ntBASIC11.03□□□□□ -0.64
LINC00643Q86TS7 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 PPP1R26P4-201ENST00000619065 3527 ntBASIC11.03□□□□□ -0.64
LINC00643Q86TS7 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
LINC00643Q86TS7 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms