Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 KRT8P47-201ENST00000604727 1398 ntBASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 EMBP1-201ENST00000458200 901 ntBASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 TNRC18P3-201ENST00000441896 2691 ntBASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 AC125634.1-201ENST00000438758 1403 ntBASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
RFWD3Q6PCD5 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 TP73-AS1-210ENST00000637775 1455 ntBASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 RCN1P2-201ENST00000398357 915 ntBASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 KRT16P4-201ENST00000453883 522 ntBASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 DUTP2-201ENST00000519164 463 ntBASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFWD3Q6PCD5 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
RFWD3Q6PCD5 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.46■□□□□ 0.54
RFWD3Q6PCD5 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFWD3Q6PCD5 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFWD3Q6PCD5 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.45■□□□□ 0.54
RFWD3Q6PCD5 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFWD3Q6PCD5 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
RFWD3Q6PCD5 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFWD3Q6PCD5 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFWD3Q6PCD5 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.45■□□□□ 0.54
RFWD3Q6PCD5 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.45■□□□□ 0.54
RFWD3Q6PCD5 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.45■□□□□ 0.54
RFWD3Q6PCD5 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RFWD3Q6PCD5 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFWD3Q6PCD5 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RFWD3Q6PCD5 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFWD3Q6PCD5 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFWD3Q6PCD5 AC100803.2-201ENST00000562459 1963 ntBASIC18.45■□□□□ 0.54
RFWD3Q6PCD5 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFWD3Q6PCD5 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFWD3Q6PCD5 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RFWD3Q6PCD5 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RFWD3Q6PCD5 POM121L3P-201ENST00000419331 1163 ntBASIC18.45■□□□□ 0.54
RFWD3Q6PCD5 TPM4P1-201ENST00000436100 807 ntBASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms