Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4BO75351 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.42■□□□□ 0.38
VPS4BO75351 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
VPS4BO75351 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4BO75351 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4BO75351 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4BO75351 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4BO75351 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.42■□□□□ 0.38
VPS4BO75351 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4BO75351 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4BO75351 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.42■□□□□ 0.38
VPS4BO75351 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4BO75351 AL355312.1-201ENST00000407115 2176 ntBASIC17.42■□□□□ 0.38
VPS4BO75351 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4BO75351 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4BO75351 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4BO75351 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4BO75351 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
VPS4BO75351 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4BO75351 PP12613-201ENST00000424958 2230 ntBASIC17.41■□□□□ 0.38
VPS4BO75351 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4BO75351 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
VPS4BO75351 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4BO75351 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
VPS4BO75351 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4BO75351 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.41■□□□□ 0.38
VPS4BO75351 LINC01311-201ENST00000565162 1445 ntBASIC17.41■□□□□ 0.38
VPS4BO75351 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4BO75351 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4BO75351 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4BO75351 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4BO75351 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.41■□□□□ 0.38
VPS4BO75351 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
VPS4BO75351 RN7SL510P-201ENST00000581311 263 ntBASIC17.41■□□□□ 0.38
VPS4BO75351 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4BO75351 AC010240.3-201ENST00000607688 395 ntBASIC17.41■□□□□ 0.38
VPS4BO75351 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4BO75351 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
VPS4BO75351 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4BO75351 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4BO75351 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4BO75351 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
VPS4BO75351 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS4BO75351 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4BO75351 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4BO75351 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
VPS4BO75351 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4BO75351 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4BO75351 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4BO75351 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.4■□□□□ 0.38
VPS4BO75351 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4BO75351 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4BO75351 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4BO75351 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4BO75351 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4BO75351 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4BO75351 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4BO75351 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4BO75351 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.4■□□□□ 0.38
VPS4BO75351 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.4■□□□□ 0.38
VPS4BO75351 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4BO75351 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4BO75351 AC111152.3-201ENST00000569699 673 ntBASIC17.4■□□□□ 0.38
VPS4BO75351 GPALPP1-207ENST00000611650 899 ntBASIC17.4■□□□□ 0.38
VPS4BO75351 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4BO75351 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4BO75351 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
VPS4BO75351 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
VPS4BO75351 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS4BO75351 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4BO75351 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4BO75351 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
VPS4BO75351 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS4BO75351 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.39■□□□□ 0.37
VPS4BO75351 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4BO75351 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4BO75351 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4BO75351 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
VPS4BO75351 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS4BO75351 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4BO75351 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4BO75351 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.39■□□□□ 0.37
VPS4BO75351 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS4BO75351 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.39■□□□□ 0.37
VPS4BO75351 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4BO75351 AC116407.2-201ENST00000613639 860 ntBASIC17.39■□□□□ 0.37
VPS4BO75351 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS4BO75351 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
VPS4BO75351 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4BO75351 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4BO75351 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4BO75351 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4BO75351 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4BO75351 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.39■□□□□ 0.37
VPS4BO75351 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4BO75351 AC132938.6-201ENST00000623828 1655 ntBASIC17.39■□□□□ 0.37
VPS4BO75351 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4BO75351 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
VPS4BO75351 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VPS4BO75351 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms