Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.48■□□□□ 0.39
TRIM13O60858 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM13O60858 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM13O60858 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.48■□□□□ 0.39
TRIM13O60858 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM13O60858 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.48■□□□□ 0.39
TRIM13O60858 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.48■□□□□ 0.39
TRIM13O60858 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM13O60858 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM13O60858 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM13O60858 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.48■□□□□ 0.39
TRIM13O60858 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
TRIM13O60858 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM13O60858 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM13O60858 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.47■□□□□ 0.39
TRIM13O60858 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM13O60858 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM13O60858 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM13O60858 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM13O60858 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.47■□□□□ 0.39
TRIM13O60858 OR6D1P-203ENST00000641209 4860 ntBASIC17.47■□□□□ 0.39
TRIM13O60858 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM13O60858 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
TRIM13O60858 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM13O60858 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM13O60858 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM13O60858 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.47■□□□□ 0.39
TRIM13O60858 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.47■□□□□ 0.39
TRIM13O60858 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM13O60858 AC008550.1-201ENST00000511500 884 ntBASIC17.47■□□□□ 0.39
TRIM13O60858 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.47■□□□□ 0.39
TRIM13O60858 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.47■□□□□ 0.39
TRIM13O60858 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
TRIM13O60858 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM13O60858 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM13O60858 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM13O60858 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM13O60858 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM13O60858 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM13O60858 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM13O60858 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM13O60858 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM13O60858 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
TRIM13O60858 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM13O60858 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.47■□□□□ 0.39
TRIM13O60858 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM13O60858 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM13O60858 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM13O60858 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM13O60858 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM13O60858 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.46■□□□□ 0.39
TRIM13O60858 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
TRIM13O60858 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM13O60858 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.46■□□□□ 0.39
TRIM13O60858 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM13O60858 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM13O60858 KRT8P47-201ENST00000604727 1398 ntBASIC17.46■□□□□ 0.39
TRIM13O60858 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.46■□□□□ 0.39
TRIM13O60858 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.46■□□□□ 0.39
TRIM13O60858 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM13O60858 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
TRIM13O60858 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.46■□□□□ 0.39
TRIM13O60858 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
TRIM13O60858 AL157888.1-201ENST00000631930 593 ntBASIC17.46■□□□□ 0.39
TRIM13O60858 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM13O60858 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM13O60858 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM13O60858 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
TRIM13O60858 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM13O60858 AC016396.2-201ENST00000562575 1417 ntBASIC17.46■□□□□ 0.39
TRIM13O60858 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
TRIM13O60858 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM13O60858 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM13O60858 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM13O60858 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM13O60858 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM13O60858 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM13O60858 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM13O60858 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM13O60858 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM13O60858 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM13O60858 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.45■□□□□ 0.38
TRIM13O60858 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.45■□□□□ 0.38
TRIM13O60858 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.45■□□□□ 0.38
TRIM13O60858 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.45■□□□□ 0.38
TRIM13O60858 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM13O60858 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.45■□□□□ 0.38
TRIM13O60858 AL355075.4-201ENST00000554988 638 ntBASIC17.45■□□□□ 0.38
TRIM13O60858 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM13O60858 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.45■□□□□ 0.38
TRIM13O60858 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
TRIM13O60858 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM13O60858 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM13O60858 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
TRIM13O60858 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
TRIM13O60858 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM13O60858 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM13O60858 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM13O60858 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
TRIM13O60858 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms