Protein–RNA interactions for Protein: Q9Y5T5

USP16, Ubiquitin carboxyl-terminal hydrolase 16, humanhuman

Predictions only

Length 823 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP16Q9Y5T5 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 PMP22-202ENST00000395936 816 ntTSL 3 BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 GPX1P2-201ENST00000429271 606 ntBASIC22.55■■□□□ 1.2
USP16Q9Y5T5 RNA5SP416-201ENST00000516838 111 ntBASIC22.55■■□□□ 1.2
USP16Q9Y5T5 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 AC040169.1-201ENST00000565382 521 ntBASIC22.55■■□□□ 1.2
USP16Q9Y5T5 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 PGM5P2-202ENST00000637225 1043 ntBASIC22.55■■□□□ 1.2
USP16Q9Y5T5 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 PC-208ENST00000529047 1607 ntTSL 3 BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC22.55■■□□□ 1.2
USP16Q9Y5T5 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 AC104581.1-202ENST00000635932 2618 ntBASIC22.54■■□□□ 1.2
USP16Q9Y5T5 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 AC064836.3-201ENST00000607928 673 ntBASIC22.54■■□□□ 1.2
USP16Q9Y5T5 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 HOTTIP_1.1-201ENST00000620415 57 ntBASIC22.54■■□□□ 1.2
USP16Q9Y5T5 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC22.54■■□□□ 1.2
USP16Q9Y5T5 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
USP16Q9Y5T5 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
USP16Q9Y5T5 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC22.53■■□□□ 1.2
USP16Q9Y5T5 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
USP16Q9Y5T5 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC22.53■■□□□ 1.2
USP16Q9Y5T5 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC22.53■■□□□ 1.2
USP16Q9Y5T5 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
USP16Q9Y5T5 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
USP16Q9Y5T5 KLF4P1-201ENST00000412782 1185 ntBASIC22.53■■□□□ 1.2
USP16Q9Y5T5 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC22.53■■□□□ 1.2
USP16Q9Y5T5 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC22.53■■□□□ 1.2
USP16Q9Y5T5 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC22.53■■□□□ 1.2
USP16Q9Y5T5 ARTN-206ENST00000472435 402 ntTSL 3 BASIC22.53■■□□□ 1.2
USP16Q9Y5T5 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC22.53■■□□□ 1.2
USP16Q9Y5T5 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC22.53■■□□□ 1.2
USP16Q9Y5T5 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
USP16Q9Y5T5 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC22.53■■□□□ 1.2
USP16Q9Y5T5 AL691403.2-201ENST00000618460 490 ntBASIC22.53■■□□□ 1.2
USP16Q9Y5T5 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC22.53■■□□□ 1.2
USP16Q9Y5T5 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC22.53■■□□□ 1.2
USP16Q9Y5T5 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
USP16Q9Y5T5 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC22.53■■□□□ 1.2
USP16Q9Y5T5 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
USP16Q9Y5T5 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP16Q9Y5T5 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP16Q9Y5T5 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP16Q9Y5T5 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP16Q9Y5T5 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP16Q9Y5T5 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP16Q9Y5T5 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP16Q9Y5T5 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC22.52■■□□□ 1.2
USP16Q9Y5T5 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
USP16Q9Y5T5 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
USP16Q9Y5T5 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC22.52■■□□□ 1.2
USP16Q9Y5T5 STK25P1-201ENST00000585406 838 ntBASIC22.52■■□□□ 1.2
USP16Q9Y5T5 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC22.52■■□□□ 1.2
USP16Q9Y5T5 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
USP16Q9Y5T5 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
USP16Q9Y5T5 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC22.52■■□□□ 1.2
USP16Q9Y5T5 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP16Q9Y5T5 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC22.52■■□□□ 1.2
USP16Q9Y5T5 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
USP16Q9Y5T5 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC22.52■■□□□ 1.2
USP16Q9Y5T5 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
USP16Q9Y5T5 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
USP16Q9Y5T5 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC22.51■■□□□ 1.19
USP16Q9Y5T5 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC22.51■■□□□ 1.19
USP16Q9Y5T5 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP16Q9Y5T5 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC22.51■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms