Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHA3Q9Y5H8 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHA3Q9Y5H8 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
PCDHA3Q9Y5H8 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHA3Q9Y5H8 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHA3Q9Y5H8 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHA3Q9Y5H8 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHA3Q9Y5H8 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHA3Q9Y5H8 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHA3Q9Y5H8 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHA3Q9Y5H8 AC011676.5-201ENST00000624864 2660 ntBASIC18.55■□□□□ 0.56
PCDHA3Q9Y5H8 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHA3Q9Y5H8 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHA3Q9Y5H8 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDHA3Q9Y5H8 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 ATP5G1P1-201ENST00000448724 379 ntBASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDHA3Q9Y5H8 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 IGHGP-201ENST00000390555 1178 ntBASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 FAM8A6P-201ENST00000407496 1135 ntBASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 AC092597.1-201ENST00000487352 616 ntBASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 LYSMD4-203ENST00000378904 2122 ntBASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PCDHA3Q9Y5H8 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PCDHA3Q9Y5H8 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
PCDHA3Q9Y5H8 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18.52■□□□□ 0.56
PCDHA3Q9Y5H8 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.52■□□□□ 0.56
PCDHA3Q9Y5H8 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
PCDHA3Q9Y5H8 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PCDHA3Q9Y5H8 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PCDHA3Q9Y5H8 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC18.52■□□□□ 0.56
PCDHA3Q9Y5H8 AC016396.2-201ENST00000562575 1417 ntBASIC18.52■□□□□ 0.56
PCDHA3Q9Y5H8 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PCDHA3Q9Y5H8 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
PCDHA3Q9Y5H8 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PCDHA3Q9Y5H8 MIR662-201ENST00000384847 95 ntBASIC18.52■□□□□ 0.56
PCDHA3Q9Y5H8 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.52■□□□□ 0.56
PCDHA3Q9Y5H8 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.52■□□□□ 0.56
PCDHA3Q9Y5H8 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
PCDHA3Q9Y5H8 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.52■□□□□ 0.56
PCDHA3Q9Y5H8 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.52■□□□□ 0.56
PCDHA3Q9Y5H8 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PCDHA3Q9Y5H8 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC18.52■□□□□ 0.56
PCDHA3Q9Y5H8 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
PCDHA3Q9Y5H8 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PCDHA3Q9Y5H8 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PCDHA3Q9Y5H8 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.52■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms