Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 AK1-201ENST00000223836 736 ntTSL 3 BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 GPX1P1-201ENST00000388829 606 ntBASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCX3AQ9NNX9 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 KRT18P14-201ENST00000534205 1250 ntBASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCX3AQ9NNX9 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 PHGDH-209ENST00000641074 1780 ntBASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCX3AQ9NNX9 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms