Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 AC120114.3-201ENST00000611923 658 ntBASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 NME4-212ENST00000621774 904 ntTSL 3 BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 AP000867.4-201ENST00000641616 219 ntBASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 PHGDH-209ENST00000641074 1780 ntBASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRAIPQ9BWF2 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 TBC1D3P5-201ENST00000579401 1545 ntBASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 AC007967.3-201ENST00000434308 558 ntBASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 AC093909.1-201ENST00000504731 1122 ntBASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 AL671883.3-201ENST00000603274 991 ntBASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 FAM215A-202ENST00000632077 792 ntBASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRAIPQ9BWF2 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 RPS2P28-201ENST00000314255 741 ntBASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 AC122714.2-201ENST00000502787 707 ntBASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 AL139288.1-201ENST00000623748 933 ntBASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
TRAIPQ9BWF2 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 AC068880.1-201ENST00000507289 2297 ntBASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 PCDHB18P-201ENST00000524813 2368 ntBASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRAIPQ9BWF2 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms