Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
CMTM3Q96MX0 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CMTM3Q96MX0 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CMTM3Q96MX0 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CMTM3Q96MX0 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CMTM3Q96MX0 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CMTM3Q96MX0 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CMTM3Q96MX0 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
CMTM3Q96MX0 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 MST1L-201ENST00000442552 2185 ntBASIC15.29■□□□□ 0.04
CMTM3Q96MX0 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 AC009949.1-201ENST00000623048 1830 ntBASIC15.29■□□□□ 0.04
CMTM3Q96MX0 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 AC124016.1-201ENST00000609552 612 ntBASIC15.29■□□□□ 0.04
CMTM3Q96MX0 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 CR392000.1-201ENST00000624770 1228 ntBASIC15.29■□□□□ 0.04
CMTM3Q96MX0 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 NFIC-211ENST00000641145 8399 ntBASIC15.29■□□□□ 0.04
CMTM3Q96MX0 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CMTM3Q96MX0 CYP2T1P-202ENST00000641596 2535 ntBASIC15.28■□□□□ 0.04
CMTM3Q96MX0 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 FDX2-207ENST00000494368 584 ntTSL 4 BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 AP003097.1-201ENST00000530657 1135 ntBASIC15.28■□□□□ 0.04
CMTM3Q96MX0 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 WWOX-216ENST00000569818 525 ntBASIC15.28■□□□□ 0.04
CMTM3Q96MX0 CABP2-204ENST00000636477 941 ntTSL 5 BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CMTM3Q96MX0 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.27■□□□□ 0.04
CMTM3Q96MX0 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CMTM3Q96MX0 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.27■□□□□ 0.04
CMTM3Q96MX0 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC15.27■□□□□ 0.04
CMTM3Q96MX0 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC15.27■□□□□ 0.04
CMTM3Q96MX0 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC15.27■□□□□ 0.04
CMTM3Q96MX0 LINC00167-201ENST00000530583 1419 ntBASIC15.27■□□□□ 0.04
CMTM3Q96MX0 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CMTM3Q96MX0 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CMTM3Q96MX0 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CMTM3Q96MX0 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CMTM3Q96MX0 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CMTM3Q96MX0 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.04
CMTM3Q96MX0 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.27■□□□□ 0.04
CMTM3Q96MX0 LINC02012-201ENST00000608206 1725 ntBASIC15.27■□□□□ 0.04
CMTM3Q96MX0 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
CMTM3Q96MX0 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms