Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
PCDH1Q08174 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDH1Q08174 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
PCDH1Q08174 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDH1Q08174 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.14■□□□□ 0.33
PCDH1Q08174 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDH1Q08174 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
PCDH1Q08174 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PCDH1Q08174 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PCDH1Q08174 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
PCDH1Q08174 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
PCDH1Q08174 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDH1Q08174 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH1Q08174 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH1Q08174 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
PCDH1Q08174 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.13■□□□□ 0.33
PCDH1Q08174 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH1Q08174 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.13■□□□□ 0.33
PCDH1Q08174 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH1Q08174 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
PCDH1Q08174 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
PCDH1Q08174 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH1Q08174 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH1Q08174 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH1Q08174 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH1Q08174 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
PCDH1Q08174 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH1Q08174 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.13■□□□□ 0.33
PCDH1Q08174 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.13■□□□□ 0.33
PCDH1Q08174 TSPY22P-201ENST00000427496 604 ntBASIC17.13■□□□□ 0.33
PCDH1Q08174 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.13■□□□□ 0.33
PCDH1Q08174 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH1Q08174 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH1Q08174 GUSBP12-201ENST00000513727 720 ntBASIC17.13■□□□□ 0.33
PCDH1Q08174 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.13■□□□□ 0.33
PCDH1Q08174 AL049597.2-201ENST00000565575 961 ntBASIC17.13■□□□□ 0.33
PCDH1Q08174 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.13■□□□□ 0.33
PCDH1Q08174 AC090616.6-201ENST00000582640 721 ntBASIC17.13■□□□□ 0.33
PCDH1Q08174 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
PCDH1Q08174 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH1Q08174 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.13■□□□□ 0.33
PCDH1Q08174 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.13■□□□□ 0.33
PCDH1Q08174 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
PCDH1Q08174 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH1Q08174 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH1Q08174 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.13■□□□□ 0.33
PCDH1Q08174 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH1Q08174 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
PCDH1Q08174 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH1Q08174 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH1Q08174 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH1Q08174 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH1Q08174 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH1Q08174 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDH1Q08174 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
PCDH1Q08174 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH1Q08174 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH1Q08174 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
PCDH1Q08174 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
PCDH1Q08174 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH1Q08174 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH1Q08174 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH1Q08174 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.12■□□□□ 0.33
PCDH1Q08174 COX5BP2-201ENST00000392354 334 ntBASIC17.12■□□□□ 0.33
PCDH1Q08174 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDH1Q08174 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH1Q08174 KRT8P26-201ENST00000534154 1276 ntBASIC17.12■□□□□ 0.33
PCDH1Q08174 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH1Q08174 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH1Q08174 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH1Q08174 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH1Q08174 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH1Q08174 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.12■□□□□ 0.33
PCDH1Q08174 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDH1Q08174 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH1Q08174 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
PCDH1Q08174 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDH1Q08174 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH1Q08174 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.12■□□□□ 0.33
PCDH1Q08174 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH1Q08174 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
PCDH1Q08174 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH1Q08174 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH1Q08174 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH1Q08174 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH1Q08174 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDH1Q08174 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH1Q08174 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
PCDH1Q08174 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
PCDH1Q08174 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDH1Q08174 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH1Q08174 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDH1Q08174 SIRPAP1-201ENST00000448467 1770 ntBASIC17.11■□□□□ 0.33
PCDH1Q08174 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.11■□□□□ 0.33
PCDH1Q08174 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
PCDH1Q08174 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH1Q08174 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH1Q08174 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.11■□□□□ 0.33
PCDH1Q08174 FAM86EP-206ENST00000510506 987 ntBASIC17.11■□□□□ 0.33
PCDH1Q08174 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms