Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PKNOX1P55347 AL157888.1-201ENST00000631930 593 ntBASIC17.46■□□□□ 0.39
PKNOX1P55347 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.46■□□□□ 0.39
PKNOX1P55347 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
PKNOX1P55347 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
PKNOX1P55347 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
PKNOX1P55347 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
PKNOX1P55347 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PKNOX1P55347 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PKNOX1P55347 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.46■□□□□ 0.39
PKNOX1P55347 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PKNOX1P55347 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.46■□□□□ 0.39
PKNOX1P55347 AC100803.2-201ENST00000562459 1963 ntBASIC17.46■□□□□ 0.39
PKNOX1P55347 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
PKNOX1P55347 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
PKNOX1P55347 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
PKNOX1P55347 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.38
PKNOX1P55347 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
PKNOX1P55347 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PKNOX1P55347 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PKNOX1P55347 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PKNOX1P55347 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.45■□□□□ 0.38
PKNOX1P55347 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.45■□□□□ 0.38
PKNOX1P55347 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PKNOX1P55347 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.45■□□□□ 0.38
PKNOX1P55347 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PKNOX1P55347 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PKNOX1P55347 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PKNOX1P55347 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PKNOX1P55347 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PKNOX1P55347 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PKNOX1P55347 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.45■□□□□ 0.38
PKNOX1P55347 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PKNOX1P55347 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PKNOX1P55347 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.45■□□□□ 0.38
PKNOX1P55347 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
PKNOX1P55347 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.45■□□□□ 0.38
PKNOX1P55347 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.45■□□□□ 0.38
PKNOX1P55347 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.45■□□□□ 0.38
PKNOX1P55347 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.45■□□□□ 0.38
PKNOX1P55347 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
PKNOX1P55347 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PKNOX1P55347 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PKNOX1P55347 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PKNOX1P55347 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PKNOX1P55347 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PKNOX1P55347 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PKNOX1P55347 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKNOX1P55347 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PKNOX1P55347 LINC00602-201ENST00000629776 2065 ntBASIC17.44■□□□□ 0.38
PKNOX1P55347 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PKNOX1P55347 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKNOX1P55347 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKNOX1P55347 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKNOX1P55347 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKNOX1P55347 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
PKNOX1P55347 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.44■□□□□ 0.38
PKNOX1P55347 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKNOX1P55347 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.44■□□□□ 0.38
PKNOX1P55347 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.44■□□□□ 0.38
PKNOX1P55347 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
PKNOX1P55347 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.44■□□□□ 0.38
PKNOX1P55347 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.44■□□□□ 0.38
PKNOX1P55347 AC116407.2-201ENST00000613639 860 ntBASIC17.44■□□□□ 0.38
PKNOX1P55347 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PKNOX1P55347 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
PKNOX1P55347 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKNOX1P55347 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.44■□□□□ 0.38
PKNOX1P55347 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PKNOX1P55347 AC133963.1-201ENST00000504166 1679 ntBASIC17.44■□□□□ 0.38
PKNOX1P55347 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PKNOX1P55347 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PKNOX1P55347 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKNOX1P55347 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKNOX1P55347 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKNOX1P55347 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKNOX1P55347 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKNOX1P55347 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
PKNOX1P55347 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKNOX1P55347 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKNOX1P55347 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKNOX1P55347 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
PKNOX1P55347 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PKNOX1P55347 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PKNOX1P55347 LINC01568-207ENST00000641790 1380 ntBASIC17.43■□□□□ 0.38
PKNOX1P55347 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.43■□□□□ 0.38
PKNOX1P55347 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PKNOX1P55347 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PKNOX1P55347 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PKNOX1P55347 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
PKNOX1P55347 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.43■□□□□ 0.38
PKNOX1P55347 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.43■□□□□ 0.38
PKNOX1P55347 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PKNOX1P55347 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.43■□□□□ 0.38
PKNOX1P55347 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.43■□□□□ 0.38
PKNOX1P55347 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.43■□□□□ 0.38
PKNOX1P55347 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PKNOX1P55347 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
PKNOX1P55347 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.43■□□□□ 0.38
PKNOX1P55347 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms