Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK3P51956 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
NEK3P51956 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.32■□□□□ 0.52
NEK3P51956 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK3P51956 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK3P51956 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK3P51956 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK3P51956 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK3P51956 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK3P51956 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK3P51956 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
NEK3P51956 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.32■□□□□ 0.52
NEK3P51956 LINC00265-3P-201ENST00000447588 903 ntBASIC18.32■□□□□ 0.52
NEK3P51956 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.32■□□□□ 0.52
NEK3P51956 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.32■□□□□ 0.52
NEK3P51956 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.32■□□□□ 0.52
NEK3P51956 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC18.32■□□□□ 0.52
NEK3P51956 PRELID1P1-202ENST00000567272 903 ntBASIC18.32■□□□□ 0.52
NEK3P51956 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.32■□□□□ 0.52
NEK3P51956 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK3P51956 AC004263.2-201ENST00000617183 678 ntBASIC18.32■□□□□ 0.52
NEK3P51956 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NEK3P51956 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK3P51956 GMCL1P1-201ENST00000463439 1581 ntBASIC18.32■□□□□ 0.52
NEK3P51956 AC108860.2-201ENST00000562760 2183 ntBASIC18.32■□□□□ 0.52
NEK3P51956 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.32■□□□□ 0.52
NEK3P51956 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
NEK3P51956 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK3P51956 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK3P51956 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK3P51956 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.32■□□□□ 0.52
NEK3P51956 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.32■□□□□ 0.52
NEK3P51956 PCDHA12-202ENST00000613593 2588 ntBASIC18.32■□□□□ 0.52
NEK3P51956 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK3P51956 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
NEK3P51956 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NEK3P51956 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
NEK3P51956 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.31■□□□□ 0.52
NEK3P51956 PP12613-201ENST00000424958 2230 ntBASIC18.31■□□□□ 0.52
NEK3P51956 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NEK3P51956 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
NEK3P51956 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
NEK3P51956 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.31■□□□□ 0.52
NEK3P51956 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.31■□□□□ 0.52
NEK3P51956 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NEK3P51956 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NEK3P51956 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NEK3P51956 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.31■□□□□ 0.52
NEK3P51956 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NEK3P51956 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
NEK3P51956 TOB2P1-201ENST00000469761 992 ntBASIC18.31■□□□□ 0.52
NEK3P51956 AC113404.2-201ENST00000507884 177 ntBASIC18.31■□□□□ 0.52
NEK3P51956 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.31■□□□□ 0.52
NEK3P51956 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.31■□□□□ 0.52
NEK3P51956 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NEK3P51956 AL592071.1-201ENST00000611956 408 ntBASIC18.31■□□□□ 0.52
NEK3P51956 AC012313.10-201ENST00000623509 926 ntBASIC18.31■□□□□ 0.52
NEK3P51956 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NEK3P51956 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
NEK3P51956 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
NEK3P51956 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NEK3P51956 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
NEK3P51956 AL024508.2-201ENST00000607749 1894 ntBASIC18.31■□□□□ 0.52
NEK3P51956 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
NEK3P51956 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
NEK3P51956 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.31■□□□□ 0.52
NEK3P51956 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NEK3P51956 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NEK3P51956 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.3■□□□□ 0.52
NEK3P51956 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
NEK3P51956 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.3■□□□□ 0.52
NEK3P51956 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NEK3P51956 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
NEK3P51956 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
NEK3P51956 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
NEK3P51956 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
NEK3P51956 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
NEK3P51956 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.3■□□□□ 0.52
NEK3P51956 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.3■□□□□ 0.52
NEK3P51956 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NEK3P51956 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
NEK3P51956 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NEK3P51956 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NEK3P51956 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NEK3P51956 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.3■□□□□ 0.52
NEK3P51956 AL450487.1-201ENST00000426799 995 ntBASIC18.3■□□□□ 0.52
NEK3P51956 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.3■□□□□ 0.52
NEK3P51956 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.3■□□□□ 0.52
NEK3P51956 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.3■□□□□ 0.52
NEK3P51956 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.3■□□□□ 0.52
NEK3P51956 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.3■□□□□ 0.52
NEK3P51956 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.3■□□□□ 0.52
NEK3P51956 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NEK3P51956 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NEK3P51956 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NEK3P51956 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NEK3P51956 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
NEK3P51956 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
NEK3P51956 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
NEK3P51956 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms