Protein–RNA interactions for Protein: P51610

HCFC1, Host cell factor 1, humanhuman

Predictions only

Length 2,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1P51610 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HCFC1P51610 AC009113.1-201ENST00000570267 2443 ntBASIC15.41■□□□□ 0.06
HCFC1P51610 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.41■□□□□ 0.06
HCFC1P51610 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HCFC1P51610 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
HCFC1P51610 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HCFC1P51610 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
HCFC1P51610 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC15.41■□□□□ 0.06
HCFC1P51610 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
HCFC1P51610 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
HCFC1P51610 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HCFC1P51610 SIRPAP1-201ENST00000448467 1770 ntBASIC15.41■□□□□ 0.06
HCFC1P51610 AL031598.1-201ENST00000561511 1773 ntBASIC15.41■□□□□ 0.06
HCFC1P51610 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HCFC1P51610 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HCFC1P51610 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HCFC1P51610 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HCFC1P51610 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HCFC1P51610 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
HCFC1P51610 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HCFC1P51610 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
HCFC1P51610 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.41■□□□□ 0.06
HCFC1P51610 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC15.41■□□□□ 0.06
HCFC1P51610 CNN2P11-201ENST00000429351 262 ntBASIC15.41■□□□□ 0.06
HCFC1P51610 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.41■□□□□ 0.06
HCFC1P51610 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.41■□□□□ 0.06
HCFC1P51610 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC15.41■□□□□ 0.06
HCFC1P51610 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.41■□□□□ 0.06
HCFC1P51610 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC15.41■□□□□ 0.06
HCFC1P51610 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC15.41■□□□□ 0.06
HCFC1P51610 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HCFC1P51610 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HCFC1P51610 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HCFC1P51610 SP100-208ENST00000427101 1922 ntTSL 2 BASIC15.41■□□□□ 0.06
HCFC1P51610 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
HCFC1P51610 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HCFC1P51610 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HCFC1P51610 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC15.4■□□□□ 0.06
HCFC1P51610 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HCFC1P51610 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC15.4■□□□□ 0.06
HCFC1P51610 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HCFC1P51610 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HCFC1P51610 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
HCFC1P51610 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HCFC1P51610 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HCFC1P51610 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
HCFC1P51610 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HCFC1P51610 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HCFC1P51610 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HCFC1P51610 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.4■□□□□ 0.06
HCFC1P51610 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC15.4■□□□□ 0.06
HCFC1P51610 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.4■□□□□ 0.06
HCFC1P51610 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.4■□□□□ 0.06
HCFC1P51610 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HCFC1P51610 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC15.4■□□□□ 0.06
HCFC1P51610 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC15.4■□□□□ 0.06
HCFC1P51610 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HCFC1P51610 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HCFC1P51610 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC15.4■□□□□ 0.06
HCFC1P51610 ELL2P1-201ENST00000413990 1906 ntBASIC15.4■□□□□ 0.06
HCFC1P51610 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC15.4■□□□□ 0.06
HCFC1P51610 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HCFC1P51610 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HCFC1P51610 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
HCFC1P51610 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
HCFC1P51610 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
HCFC1P51610 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
HCFC1P51610 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HCFC1P51610 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
HCFC1P51610 TSEN15P1-201ENST00000423257 515 ntBASIC15.39■□□□□ 0.05
HCFC1P51610 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.39■□□□□ 0.05
HCFC1P51610 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HCFC1P51610 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HCFC1P51610 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HCFC1P51610 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC15.39■□□□□ 0.05
HCFC1P51610 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.39■□□□□ 0.05
HCFC1P51610 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC15.39■□□□□ 0.05
HCFC1P51610 C20orf181-201ENST00000623918 480 ntBASIC15.39■□□□□ 0.05
HCFC1P51610 ORC5-208ENST00000626700 344 ntTSL 3 BASIC15.39■□□□□ 0.05
HCFC1P51610 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC15.39■□□□□ 0.05
HCFC1P51610 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
HCFC1P51610 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
HCFC1P51610 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HCFC1P51610 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HCFC1P51610 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
HCFC1P51610 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
HCFC1P51610 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HCFC1P51610 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HCFC1P51610 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
HCFC1P51610 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HCFC1P51610 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
HCFC1P51610 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
HCFC1P51610 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HCFC1P51610 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC15.39■□□□□ 0.05
HCFC1P51610 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HCFC1P51610 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HCFC1P51610 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HCFC1P51610 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC15.39■□□□□ 0.05
HCFC1P51610 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HCFC1P51610 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms