Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NEDD4P46934 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.89■□□□□ 0.93
NEDD4P46934 AC122714.2-201ENST00000502787 707 ntBASIC20.89■□□□□ 0.93
NEDD4P46934 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC20.89■□□□□ 0.93
NEDD4P46934 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC20.89■□□□□ 0.93
NEDD4P46934 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NEDD4P46934 AL591684.3-201ENST00000605187 298 ntBASIC20.89■□□□□ 0.93
NEDD4P46934 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NEDD4P46934 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.89■□□□□ 0.93
NEDD4P46934 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NEDD4P46934 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
NEDD4P46934 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NEDD4P46934 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.89■□□□□ 0.93
NEDD4P46934 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NEDD4P46934 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NEDD4P46934 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NEDD4P46934 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.93
NEDD4P46934 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
NEDD4P46934 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NEDD4P46934 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NEDD4P46934 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
NEDD4P46934 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
NEDD4P46934 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20.88■□□□□ 0.93
NEDD4P46934 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
NEDD4P46934 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC20.88■□□□□ 0.93
NEDD4P46934 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.88■□□□□ 0.93
NEDD4P46934 MED16-201ENST00000269814 1199 ntTSL 5 BASIC20.88■□□□□ 0.93
NEDD4P46934 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.88■□□□□ 0.93
NEDD4P46934 FUOM-202ENST00000368551 628 ntTSL 3 BASIC20.88■□□□□ 0.93
NEDD4P46934 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NEDD4P46934 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC20.88■□□□□ 0.93
NEDD4P46934 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC20.88■□□□□ 0.93
NEDD4P46934 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.88■□□□□ 0.93
NEDD4P46934 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC20.88■□□□□ 0.93
NEDD4P46934 GZMM-202ENST00000592501 941 ntTSL 3 BASIC20.88■□□□□ 0.93
NEDD4P46934 AP001269.4-201ENST00000609611 512 ntBASIC20.88■□□□□ 0.93
NEDD4P46934 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
NEDD4P46934 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NEDD4P46934 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC20.88■□□□□ 0.93
NEDD4P46934 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
NEDD4P46934 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC20.88■□□□□ 0.93
NEDD4P46934 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NEDD4P46934 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
NEDD4P46934 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NEDD4P46934 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NEDD4P46934 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC20.88■□□□□ 0.93
NEDD4P46934 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
NEDD4P46934 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NEDD4P46934 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NEDD4P46934 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.87■□□□□ 0.93
NEDD4P46934 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
NEDD4P46934 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NEDD4P46934 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
NEDD4P46934 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
NEDD4P46934 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NEDD4P46934 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.87■□□□□ 0.93
NEDD4P46934 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.87■□□□□ 0.93
NEDD4P46934 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC20.87■□□□□ 0.93
NEDD4P46934 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.87■□□□□ 0.93
NEDD4P46934 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC20.87■□□□□ 0.93
NEDD4P46934 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
NEDD4P46934 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC20.87■□□□□ 0.93
NEDD4P46934 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.87■□□□□ 0.93
NEDD4P46934 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.87■□□□□ 0.93
NEDD4P46934 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC20.87■□□□□ 0.93
NEDD4P46934 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC20.87■□□□□ 0.93
NEDD4P46934 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
NEDD4P46934 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NEDD4P46934 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
NEDD4P46934 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NEDD4P46934 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
NEDD4P46934 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20.87■□□□□ 0.93
NEDD4P46934 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
NEDD4P46934 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NEDD4P46934 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC20.87■□□□□ 0.93
NEDD4P46934 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
NEDD4P46934 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
NEDD4P46934 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC20.86■□□□□ 0.93
NEDD4P46934 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NEDD4P46934 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NEDD4P46934 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.86■□□□□ 0.93
NEDD4P46934 CTNS-203ENST00000399306 803 ntTSL 3 BASIC20.86■□□□□ 0.93
NEDD4P46934 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.86■□□□□ 0.93
NEDD4P46934 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NEDD4P46934 AC111152.3-201ENST00000569699 673 ntBASIC20.86■□□□□ 0.93
NEDD4P46934 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC20.86■□□□□ 0.93
NEDD4P46934 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NEDD4P46934 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.86■□□□□ 0.93
NEDD4P46934 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NEDD4P46934 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
NEDD4P46934 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NEDD4P46934 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NEDD4P46934 AL049757.1-201ENST00000616842 1596 ntBASIC20.86■□□□□ 0.93
NEDD4P46934 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC20.86■□□□□ 0.93
NEDD4P46934 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NEDD4P46934 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NEDD4P46934 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
NEDD4P46934 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC20.86■□□□□ 0.93
NEDD4P46934 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NEDD4P46934 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms