Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC22.17■■□□□ 1.14
COL5A3P25940 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
COL5A3P25940 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
COL5A3P25940 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
COL5A3P25940 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC22.17■■□□□ 1.14
COL5A3P25940 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
COL5A3P25940 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL5A3P25940 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC22.17■■□□□ 1.14
COL5A3P25940 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL5A3P25940 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
COL5A3P25940 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL5A3P25940 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL5A3P25940 NABP1-203ENST00000409510 843 ntTSL 5 BASIC22.17■■□□□ 1.14
COL5A3P25940 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC22.17■■□□□ 1.14
COL5A3P25940 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC22.17■■□□□ 1.14
COL5A3P25940 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC22.17■■□□□ 1.14
COL5A3P25940 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL5A3P25940 AL390955.2-201ENST00000603032 514 ntBASIC22.17■■□□□ 1.14
COL5A3P25940 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC22.17■■□□□ 1.14
COL5A3P25940 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL5A3P25940 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
COL5A3P25940 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC22.16■■□□□ 1.14
COL5A3P25940 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL5A3P25940 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC22.16■■□□□ 1.14
COL5A3P25940 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL5A3P25940 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC22.16■■□□□ 1.14
COL5A3P25940 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
COL5A3P25940 FLYWCH1P1-201ENST00000460917 1874 ntBASIC22.16■■□□□ 1.14
COL5A3P25940 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
COL5A3P25940 ENSA-206ENST00000361631 725 ntTSL 2 BASIC22.16■■□□□ 1.14
COL5A3P25940 MYCLP1-201ENST00000372451 1075 ntBASIC22.16■■□□□ 1.14
COL5A3P25940 AL355306.1-201ENST00000415580 579 ntBASIC22.16■■□□□ 1.14
COL5A3P25940 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC22.16■■□□□ 1.14
COL5A3P25940 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL5A3P25940 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL5A3P25940 THTPA-204ENST00000554970 569 ntTSL 4 BASIC22.16■■□□□ 1.14
COL5A3P25940 THTPA-206ENST00000556015 535 ntTSL 3 BASIC22.16■■□□□ 1.14
COL5A3P25940 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC22.16■■□□□ 1.14
COL5A3P25940 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
COL5A3P25940 Z92544.3-201ENST00000624747 417 ntBASIC22.16■■□□□ 1.14
COL5A3P25940 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC22.16■■□□□ 1.14
COL5A3P25940 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC22.16■■□□□ 1.14
COL5A3P25940 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
COL5A3P25940 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC22.15■■□□□ 1.14
COL5A3P25940 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL5A3P25940 KRT18P32-201ENST00000424695 1287 ntBASIC22.15■■□□□ 1.14
COL5A3P25940 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC22.15■■□□□ 1.14
COL5A3P25940 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC22.15■■□□□ 1.14
COL5A3P25940 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC22.15■■□□□ 1.14
COL5A3P25940 AC004835.2-201ENST00000603762 682 ntBASIC22.15■■□□□ 1.14
COL5A3P25940 AC116407.2-201ENST00000613639 860 ntBASIC22.15■■□□□ 1.14
COL5A3P25940 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC22.15■■□□□ 1.14
COL5A3P25940 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL5A3P25940 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC22.15■■□□□ 1.14
COL5A3P25940 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC22.15■■□□□ 1.14
COL5A3P25940 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
COL5A3P25940 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
COL5A3P25940 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC22.15■■□□□ 1.14
COL5A3P25940 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
COL5A3P25940 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC22.15■■□□□ 1.14
COL5A3P25940 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL5A3P25940 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL5A3P25940 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL5A3P25940 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
COL5A3P25940 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC22.14■■□□□ 1.14
COL5A3P25940 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC22.14■■□□□ 1.14
COL5A3P25940 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC22.14■■□□□ 1.14
COL5A3P25940 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC22.14■■□□□ 1.14
COL5A3P25940 AC112191.1-201ENST00000523689 701 ntBASIC22.14■■□□□ 1.14
COL5A3P25940 AC015911.4-201ENST00000588022 1070 ntBASIC22.14■■□□□ 1.14
COL5A3P25940 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC22.14■■□□□ 1.14
COL5A3P25940 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
COL5A3P25940 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
COL5A3P25940 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
COL5A3P25940 AC140658.5-201ENST00000438532 169 ntBASIC22.14■■□□□ 1.13
COL5A3P25940 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC22.14■■□□□ 1.13
COL5A3P25940 RPL28-209ENST00000560055 670 ntTSL 3 BASIC22.14■■□□□ 1.13
COL5A3P25940 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
COL5A3P25940 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
COL5A3P25940 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
COL5A3P25940 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
COL5A3P25940 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC22.13■■□□□ 1.13
COL5A3P25940 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
COL5A3P25940 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
COL5A3P25940 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC22.13■■□□□ 1.13
COL5A3P25940 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
COL5A3P25940 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
COL5A3P25940 TK1-204ENST00000590430 683 ntTSL 3 BASIC22.13■■□□□ 1.13
COL5A3P25940 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
COL5A3P25940 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC22.13■■□□□ 1.13
COL5A3P25940 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
COL5A3P25940 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
COL5A3P25940 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
COL5A3P25940 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC22.12■■□□□ 1.13
COL5A3P25940 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC22.12■■□□□ 1.13
COL5A3P25940 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL5A3P25940 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
COL5A3P25940 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL5A3P25940 PTMS-202ENST00000389462 773 ntTSL 2 BASIC22.12■■□□□ 1.13
COL5A3P25940 KRT8P48-201ENST00000515599 1220 ntBASIC22.12■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms