Protein–RNA interactions for Protein: P04004

VTN, Vitronectin, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTNP04004 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VTNP04004 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC19.41■□□□□ 0.7
VTNP04004 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VTNP04004 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
VTNP04004 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VTNP04004 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VTNP04004 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC19.41■□□□□ 0.7
VTNP04004 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VTNP04004 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.41■□□□□ 0.7
VTNP04004 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.41■□□□□ 0.7
VTNP04004 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VTNP04004 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VTNP04004 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VTNP04004 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
VTNP04004 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.41■□□□□ 0.7
VTNP04004 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC19.41■□□□□ 0.7
VTNP04004 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19.41■□□□□ 0.7
VTNP04004 RNA5SP415-201ENST00000517246 115 ntBASIC19.41■□□□□ 0.7
VTNP04004 CD63-204ENST00000546939 779 ntTSL 3 BASIC19.41■□□□□ 0.7
VTNP04004 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VTNP04004 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.41■□□□□ 0.7
VTNP04004 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VTNP04004 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
VTNP04004 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
VTNP04004 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VTNP04004 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
VTNP04004 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.41■□□□□ 0.7
VTNP04004 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
VTNP04004 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VTNP04004 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC19.41■□□□□ 0.7
VTNP04004 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VTNP04004 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
VTNP04004 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.4■□□□□ 0.7
VTNP04004 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
VTNP04004 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VTNP04004 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VTNP04004 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
VTNP04004 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VTNP04004 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VTNP04004 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC19.4■□□□□ 0.7
VTNP04004 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.4■□□□□ 0.7
VTNP04004 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
VTNP04004 AC145285.3-201ENST00000564603 959 ntBASIC19.4■□□□□ 0.7
VTNP04004 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.4■□□□□ 0.7
VTNP04004 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.4■□□□□ 0.7
VTNP04004 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC19.4■□□□□ 0.7
VTNP04004 AC117500.6-201ENST00000624871 588 ntBASIC19.4■□□□□ 0.7
VTNP04004 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.4■□□□□ 0.7
VTNP04004 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VTNP04004 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC19.4■□□□□ 0.7
VTNP04004 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.4■□□□□ 0.7
VTNP04004 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
VTNP04004 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VTNP04004 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
VTNP04004 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VTNP04004 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VTNP04004 FUT8-AS1-201ENST00000621019 1521 ntBASIC19.4■□□□□ 0.7
VTNP04004 BX276092.7-203ENST00000637198 1536 ntBASIC19.4■□□□□ 0.7
VTNP04004 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.4■□□□□ 0.7
VTNP04004 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VTNP04004 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19.4■□□□□ 0.7
VTNP04004 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
VTNP04004 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
VTNP04004 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
VTNP04004 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
VTNP04004 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
VTNP04004 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VTNP04004 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC19.39■□□□□ 0.69
VTNP04004 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.39■□□□□ 0.69
VTNP04004 AL020989.1-201ENST00000422979 469 ntBASIC19.39■□□□□ 0.69
VTNP04004 DDX43P3-201ENST00000441064 443 ntBASIC19.39■□□□□ 0.69
VTNP04004 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
VTNP04004 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC19.39■□□□□ 0.69
VTNP04004 AC034105.1-201ENST00000563488 319 ntBASIC19.39■□□□□ 0.69
VTNP04004 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC19.39■□□□□ 0.69
VTNP04004 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VTNP04004 CYB561-217ENST00000582997 877 ntTSL 5 BASIC19.39■□□□□ 0.69
VTNP04004 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VTNP04004 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VTNP04004 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VTNP04004 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VTNP04004 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VTNP04004 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VTNP04004 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VTNP04004 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VTNP04004 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VTNP04004 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VTNP04004 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC19.39■□□□□ 0.69
VTNP04004 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
VTNP04004 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VTNP04004 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
VTNP04004 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.39■□□□□ 0.69
VTNP04004 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VTNP04004 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VTNP04004 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VTNP04004 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.38■□□□□ 0.69
VTNP04004 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
VTNP04004 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VTNP04004 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VTNP04004 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms