Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 AC005829.2-201ENST00000571422 1056 ntBASIC13.39□□□□□ -0.27
HLA-DQA1P01909 MIR4758-201ENST00000577688 71 ntBASIC13.39□□□□□ -0.27
HLA-DQA1P01909 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 FLJ16779-201ENST00000612722 7638 ntBASIC13.39□□□□□ -0.27
HLA-DQA1P01909 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 WT1-209ENST00000530998 2421 ntTSL 2 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DQA1P01909 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 MFF-205ENST00000354503 1085 ntTSL 2 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 MAP2K4P1-201ENST00000438453 1195 ntBASIC13.38□□□□□ -0.27
HLA-DQA1P01909 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 MARS-234ENST00000630571 216 ntTSL 5 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 MARS-235ENST00000630803 183 ntTSL 3 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 HLA-J-201ENST00000462773 1622 ntBASIC13.38□□□□□ -0.27
HLA-DQA1P01909 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DQA1P01909 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 BANP-201ENST00000286122 2368 ntTSL 5 BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 AC092118.2-201ENST00000613495 667 ntBASIC13.37□□□□□ -0.27
HLA-DQA1P01909 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DQA1P01909 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms