Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM49D1C9J1S8 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 EGLN1P1-201ENST00000531623 762 ntBASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 TNRC18P3-201ENST00000441896 2691 ntBASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM49D1C9J1S8 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 PVRIG2P-201ENST00000435460 978 ntBASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 AL157888.1-201ENST00000631930 593 ntBASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.81■□□□□ 0.44
TRIM49D1C9J1S8 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 DDX43P3-201ENST00000441064 443 ntBASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 AC008550.1-201ENST00000511500 884 ntBASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 AL355075.4-201ENST00000554988 638 ntBASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
TRIM49D1C9J1S8 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 KRT8P47-201ENST00000604727 1398 ntBASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
TRIM49D1C9J1S8 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms