Protein–RNA interactions for Protein: A0A0C4DH34

IGHV4-28, Immunoglobulin heavy variable 4-28, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IGHV4-28A0A0C4DH34 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 MADD-208ENST00000405573 1823 ntTSL 5 BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 EFTUD1P1-204ENST00000560401 1798 ntBASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC12.84□□□□□ -0.35
IGHV4-28A0A0C4DH34 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
IGHV4-28A0A0C4DH34 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
IGHV4-28A0A0C4DH34 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
IGHV4-28A0A0C4DH34 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC12.83□□□□□ -0.35
IGHV4-28A0A0C4DH34 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
IGHV4-28A0A0C4DH34 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.35
IGHV4-28A0A0C4DH34 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 LSM5-204ENST00000409909 740 ntTSL 2 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 AC011467.2-201ENST00000598425 242 ntBASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC12.83□□□□□ -0.36
IGHV4-28A0A0C4DH34 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
IGHV4-28A0A0C4DH34 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
IGHV4-28A0A0C4DH34 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC12.82□□□□□ -0.36
IGHV4-28A0A0C4DH34 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
IGHV4-28A0A0C4DH34 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
IGHV4-28A0A0C4DH34 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
IGHV4-28A0A0C4DH34 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
IGHV4-28A0A0C4DH34 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
IGHV4-28A0A0C4DH34 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
IGHV4-28A0A0C4DH34 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
IGHV4-28A0A0C4DH34 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
IGHV4-28A0A0C4DH34 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
IGHV4-28A0A0C4DH34 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms