Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC20.89■□□□□ 0.93
DDX4Q9NQI0 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC20.89■□□□□ 0.93
DDX4Q9NQI0 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC20.89■□□□□ 0.93
DDX4Q9NQI0 AC040169.1-201ENST00000565382 521 ntBASIC20.89■□□□□ 0.93
DDX4Q9NQI0 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC20.89■□□□□ 0.93
DDX4Q9NQI0 PGM5P2-202ENST00000637225 1043 ntBASIC20.89■□□□□ 0.93
DDX4Q9NQI0 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
DDX4Q9NQI0 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
DDX4Q9NQI0 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.89■□□□□ 0.93
DDX4Q9NQI0 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
DDX4Q9NQI0 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.89■□□□□ 0.93
DDX4Q9NQI0 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
DDX4Q9NQI0 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
DDX4Q9NQI0 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 GID4-202ENST00000376345 1391 ntTSL 3 BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 AC112482.1-201ENST00000492080 688 ntBASIC20.88■□□□□ 0.93
DDX4Q9NQI0 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
DDX4Q9NQI0 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 NCF1C-201ENST00000438382 1427 ntBASIC20.87■□□□□ 0.93
DDX4Q9NQI0 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 PMP22-202ENST00000395936 816 ntTSL 3 BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 AC116407.2-201ENST00000613639 860 ntBASIC20.87■□□□□ 0.93
DDX4Q9NQI0 HOTTIP_1.1-201ENST00000620415 57 ntBASIC20.87■□□□□ 0.93
DDX4Q9NQI0 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
DDX4Q9NQI0 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 BEX3-201ENST00000361298 921 ntTSL 2 BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 SIGLEC30P-201ENST00000455569 941 ntBASIC20.86■□□□□ 0.93
DDX4Q9NQI0 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 AC108073.2-201ENST00000464002 357 ntBASIC20.86■□□□□ 0.93
DDX4Q9NQI0 S100A2-206ENST00000497140 697 ntTSL 2 BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 AL691403.2-201ENST00000618460 490 ntBASIC20.86■□□□□ 0.93
DDX4Q9NQI0 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.86■□□□□ 0.93
DDX4Q9NQI0 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms