Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 WDR88-203ENST00000592765 651 ntTSL 5 BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 AL121894.2-201ENST00000602977 491 ntBASIC18.32■□□□□ 0.52
USP29Q9HBJ7 AC009154.2-201ENST00000621177 724 ntBASIC18.32■□□□□ 0.52
USP29Q9HBJ7 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 AC099398.1-201ENST00000567919 2776 ntBASIC18.32■□□□□ 0.52
USP29Q9HBJ7 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP29Q9HBJ7 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 IGHGP-201ENST00000390555 1178 ntBASIC18.31■□□□□ 0.52
USP29Q9HBJ7 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 SPDYE13P-201ENST00000445314 798 ntBASIC18.31■□□□□ 0.52
USP29Q9HBJ7 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP29Q9HBJ7 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 AC026396.1-201ENST00000419388 421 ntBASIC18.3■□□□□ 0.52
USP29Q9HBJ7 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 AL121672.3-201ENST00000608644 468 ntBASIC18.3■□□□□ 0.52
USP29Q9HBJ7 NPAP1P7-201ENST00000613027 823 ntBASIC18.3■□□□□ 0.52
USP29Q9HBJ7 AC116407.2-201ENST00000613639 860 ntBASIC18.3■□□□□ 0.52
USP29Q9HBJ7 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USP29Q9HBJ7 AL138688.1-201ENST00000624851 1594 ntBASIC18.3■□□□□ 0.52
USP29Q9HBJ7 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 DDX43P3-201ENST00000441064 443 ntBASIC18.29■□□□□ 0.52
USP29Q9HBJ7 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.29■□□□□ 0.52
USP29Q9HBJ7 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms