Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 TSPY5P-201ENST00000426936 936 ntBASIC19.61■□□□□ 0.73
CCDC40Q4G0X9 ZNF444P1-201ENST00000559497 298 ntBASIC19.61■□□□□ 0.73
CCDC40Q4G0X9 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.61■□□□□ 0.73
CCDC40Q4G0X9 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.61■□□□□ 0.73
CCDC40Q4G0X9 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC40Q4G0X9 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC40Q4G0X9 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC19.61■□□□□ 0.73
CCDC40Q4G0X9 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
CCDC40Q4G0X9 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC40Q4G0X9 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC40Q4G0X9 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC40Q4G0X9 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC40Q4G0X9 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC40Q4G0X9 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 KRT18P38-201ENST00000449496 1282 ntBASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 HOMER2P1-201ENST00000455653 964 ntBASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 AC006011.2-201ENST00000621313 1158 ntBASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC40Q4G0X9 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 TSPY12P-201ENST00000421279 868 ntBASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 AC092647.4-201ENST00000457211 535 ntBASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 AP003733.1-201ENST00000491725 852 ntBASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC40Q4G0X9 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.73
CCDC40Q4G0X9 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.58■□□□□ 0.73
CCDC40Q4G0X9 AC009949.1-201ENST00000623048 1830 ntBASIC19.58■□□□□ 0.73
CCDC40Q4G0X9 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC19.58■□□□□ 0.73
CCDC40Q4G0X9 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC40Q4G0X9 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC40Q4G0X9 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC40Q4G0X9 AC112907.2-201ENST00000448639 330 ntBASIC19.58■□□□□ 0.72
CCDC40Q4G0X9 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC40Q4G0X9 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC40Q4G0X9 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC40Q4G0X9 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.58■□□□□ 0.72
CCDC40Q4G0X9 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC40Q4G0X9 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC40Q4G0X9 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC19.58■□□□□ 0.72
CCDC40Q4G0X9 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC40Q4G0X9 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC40Q4G0X9 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC40Q4G0X9 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms