Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
H3F3AP84243 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC15.92■□□□□ 0.14
H3F3AP84243 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
H3F3AP84243 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
H3F3AP84243 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
H3F3AP84243 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
H3F3AP84243 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC15.91■□□□□ 0.14
H3F3AP84243 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
H3F3AP84243 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 NME9-203ENST00000383180 2133 ntTSL 2 BASIC15.91■□□□□ 0.14
H3F3AP84243 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 AC012317.2-201ENST00000623305 2251 ntBASIC15.91■□□□□ 0.14
H3F3AP84243 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC15.91■□□□□ 0.14
H3F3AP84243 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
H3F3AP84243 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC15.91■□□□□ 0.14
H3F3AP84243 CDV3-207ENST00000508481 661 ntTSL 3 BASIC15.91■□□□□ 0.14
H3F3AP84243 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC15.91■□□□□ 0.14
H3F3AP84243 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC15.91■□□□□ 0.14
H3F3AP84243 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC15.91■□□□□ 0.14
H3F3AP84243 AC093458.2-201ENST00000623150 629 ntBASIC15.91■□□□□ 0.14
H3F3AP84243 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC15.91■□□□□ 0.14
H3F3AP84243 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC15.91■□□□□ 0.14
H3F3AP84243 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC15.91■□□□□ 0.14
H3F3AP84243 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC15.91■□□□□ 0.14
H3F3AP84243 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC15.91■□□□□ 0.14
H3F3AP84243 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC15.91■□□□□ 0.14
H3F3AP84243 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
H3F3AP84243 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC15.91■□□□□ 0.14
H3F3AP84243 GNE-204ENST00000539208 2190 ntTSL 2 BASIC15.9■□□□□ 0.14
H3F3AP84243 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
H3F3AP84243 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
H3F3AP84243 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
H3F3AP84243 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
H3F3AP84243 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
H3F3AP84243 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
H3F3AP84243 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
H3F3AP84243 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
H3F3AP84243 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
H3F3AP84243 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
H3F3AP84243 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
H3F3AP84243 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC15.9■□□□□ 0.14
H3F3AP84243 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
H3F3AP84243 LINC00265-3P-201ENST00000447588 903 ntBASIC15.9■□□□□ 0.14
H3F3AP84243 KRT17P6-201ENST00000453795 1220 ntBASIC15.9■□□□□ 0.14
H3F3AP84243 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
H3F3AP84243 AC012615.1-201ENST00000565797 1299 ntBASIC15.9■□□□□ 0.14
H3F3AP84243 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC15.9■□□□□ 0.14
H3F3AP84243 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC15.9■□□□□ 0.14
H3F3AP84243 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC15.9■□□□□ 0.14
H3F3AP84243 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC15.9■□□□□ 0.14
H3F3AP84243 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC15.9■□□□□ 0.14
H3F3AP84243 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
H3F3AP84243 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC15.9■□□□□ 0.14
H3F3AP84243 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC15.9■□□□□ 0.14
H3F3AP84243 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
H3F3AP84243 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC15.9■□□□□ 0.14
H3F3AP84243 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
H3F3AP84243 AC134043.2-201ENST00000624206 2238 ntBASIC15.9■□□□□ 0.14
H3F3AP84243 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
H3F3AP84243 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
H3F3AP84243 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC15.89■□□□□ 0.13
H3F3AP84243 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
H3F3AP84243 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
H3F3AP84243 AC010460.3-201ENST00000511359 1579 ntBASIC15.89■□□□□ 0.13
H3F3AP84243 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
H3F3AP84243 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
H3F3AP84243 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
H3F3AP84243 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
H3F3AP84243 COX5BP2-201ENST00000392354 334 ntBASIC15.89■□□□□ 0.13
H3F3AP84243 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC15.89■□□□□ 0.13
H3F3AP84243 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
H3F3AP84243 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
H3F3AP84243 DANCR-204ENST00000444958 709 ntTSL 3 BASIC15.89■□□□□ 0.13
H3F3AP84243 MEG3-211ENST00000452514 461 ntTSL 3 BASIC15.89■□□□□ 0.13
H3F3AP84243 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
H3F3AP84243 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC15.89■□□□□ 0.13
H3F3AP84243 NMU-205ENST00000511469 756 ntTSL 3 BASIC15.89■□□□□ 0.13
H3F3AP84243 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC15.89■□□□□ 0.13
H3F3AP84243 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC15.89■□□□□ 0.13
H3F3AP84243 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
H3F3AP84243 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms