Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CDH6P55285 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
CDH6P55285 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CDH6P55285 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH6P55285 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
CDH6P55285 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CDH6P55285 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CDH6P55285 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.52■□□□□ 0.56
CDH6P55285 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH6P55285 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH6P55285 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.52■□□□□ 0.56
CDH6P55285 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.52■□□□□ 0.56
CDH6P55285 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH6P55285 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.52■□□□□ 0.56
CDH6P55285 AC068472.1-201ENST00000474589 881 ntBASIC18.52■□□□□ 0.56
CDH6P55285 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.52■□□□□ 0.56
CDH6P55285 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.52■□□□□ 0.56
CDH6P55285 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH6P55285 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH6P55285 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CDH6P55285 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
CDH6P55285 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
CDH6P55285 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
CDH6P55285 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.52■□□□□ 0.55
CDH6P55285 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CDH6P55285 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
CDH6P55285 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.52■□□□□ 0.55
CDH6P55285 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
CDH6P55285 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CDH6P55285 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.51■□□□□ 0.55
CDH6P55285 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDH6P55285 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDH6P55285 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDH6P55285 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.51■□□□□ 0.55
CDH6P55285 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDH6P55285 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.51■□□□□ 0.55
CDH6P55285 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CDH6P55285 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDH6P55285 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.51■□□□□ 0.55
CDH6P55285 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDH6P55285 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.51■□□□□ 0.55
CDH6P55285 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDH6P55285 DDX43P3-201ENST00000441064 443 ntBASIC18.51■□□□□ 0.55
CDH6P55285 MTCL1P1-201ENST00000446207 792 ntBASIC18.51■□□□□ 0.55
CDH6P55285 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDH6P55285 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.51■□□□□ 0.55
CDH6P55285 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.51■□□□□ 0.55
CDH6P55285 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDH6P55285 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDH6P55285 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
CDH6P55285 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CDH6P55285 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDH6P55285 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.51■□□□□ 0.55
CDH6P55285 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.51■□□□□ 0.55
CDH6P55285 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.51■□□□□ 0.55
CDH6P55285 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.51■□□□□ 0.55
CDH6P55285 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDH6P55285 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDH6P55285 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDH6P55285 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDH6P55285 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CDH6P55285 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDH6P55285 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CDH6P55285 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDH6P55285 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.5■□□□□ 0.55
CDH6P55285 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CDH6P55285 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDH6P55285 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.5■□□□□ 0.55
CDH6P55285 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDH6P55285 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDH6P55285 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.5■□□□□ 0.55
CDH6P55285 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CDH6P55285 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.5■□□□□ 0.55
CDH6P55285 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.5■□□□□ 0.55
CDH6P55285 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CDH6P55285 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.5■□□□□ 0.55
CDH6P55285 NTF6B-201ENST00000591913 560 ntBASIC18.5■□□□□ 0.55
CDH6P55285 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDH6P55285 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDH6P55285 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDH6P55285 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CDH6P55285 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.5■□□□□ 0.55
CDH6P55285 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDH6P55285 AC133963.1-201ENST00000504166 1679 ntBASIC18.5■□□□□ 0.55
CDH6P55285 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDH6P55285 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH6P55285 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.49■□□□□ 0.55
CDH6P55285 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH6P55285 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CDH6P55285 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDH6P55285 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH6P55285 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH6P55285 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH6P55285 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDH6P55285 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH6P55285 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH6P55285 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CDH6P55285 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH6P55285 AL031133.1-201ENST00000406807 723 ntBASIC18.49■□□□□ 0.55
CDH6P55285 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms