Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
MRE11P49959 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.76■□□□□ 0.91
MRE11P49959 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
MRE11P49959 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MRE11P49959 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MRE11P49959 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
MRE11P49959 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MRE11P49959 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
MRE11P49959 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC20.76■□□□□ 0.91
MRE11P49959 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
MRE11P49959 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC20.75■□□□□ 0.91
MRE11P49959 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
MRE11P49959 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC20.75■□□□□ 0.91
MRE11P49959 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
MRE11P49959 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC20.75■□□□□ 0.91
MRE11P49959 PGR-209ENST00000617858 2816 ntTSL 5 BASIC20.75■□□□□ 0.91
MRE11P49959 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
MRE11P49959 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
MRE11P49959 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MRE11P49959 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
MRE11P49959 TUBB8P6-201ENST00000436895 1288 ntBASIC20.75■□□□□ 0.91
MRE11P49959 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
MRE11P49959 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.75■□□□□ 0.91
MRE11P49959 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.75■□□□□ 0.91
MRE11P49959 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.75■□□□□ 0.91
MRE11P49959 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MRE11P49959 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.75■□□□□ 0.91
MRE11P49959 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MRE11P49959 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MRE11P49959 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MRE11P49959 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MRE11P49959 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
MRE11P49959 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
MRE11P49959 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC20.75■□□□□ 0.91
MRE11P49959 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MRE11P49959 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
MRE11P49959 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC20.75■□□□□ 0.91
MRE11P49959 LINC01126-201ENST00000623515 1646 ntBASIC20.75■□□□□ 0.91
MRE11P49959 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MRE11P49959 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
MRE11P49959 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MRE11P49959 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
MRE11P49959 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MRE11P49959 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
MRE11P49959 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC20.74■□□□□ 0.91
MRE11P49959 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
MRE11P49959 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MRE11P49959 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MRE11P49959 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.74■□□□□ 0.91
MRE11P49959 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.74■□□□□ 0.91
MRE11P49959 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.74■□□□□ 0.91
MRE11P49959 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.74■□□□□ 0.91
MRE11P49959 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
MRE11P49959 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC20.74■□□□□ 0.91
MRE11P49959 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.74■□□□□ 0.91
MRE11P49959 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
MRE11P49959 KRT18P22-201ENST00000402024 1347 ntBASIC20.74■□□□□ 0.91
MRE11P49959 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
MRE11P49959 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.74■□□□□ 0.91
MRE11P49959 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC20.73■□□□□ 0.91
MRE11P49959 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MRE11P49959 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MRE11P49959 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MRE11P49959 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
MRE11P49959 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MRE11P49959 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MRE11P49959 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20.73■□□□□ 0.91
MRE11P49959 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC20.73■□□□□ 0.91
MRE11P49959 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MRE11P49959 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MRE11P49959 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
MRE11P49959 SNCG-201ENST00000348795 684 ntTSL 2 BASIC20.73■□□□□ 0.91
MRE11P49959 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MRE11P49959 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.73■□□□□ 0.91
MRE11P49959 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MRE11P49959 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MRE11P49959 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.73■□□□□ 0.91
MRE11P49959 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC20.73■□□□□ 0.91
MRE11P49959 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.73■□□□□ 0.91
MRE11P49959 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MRE11P49959 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC20.73■□□□□ 0.91
MRE11P49959 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC20.73■□□□□ 0.91
MRE11P49959 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
MRE11P49959 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MRE11P49959 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MRE11P49959 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MRE11P49959 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MRE11P49959 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
MRE11P49959 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC20.72■□□□□ 0.91
MRE11P49959 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC20.72■□□□□ 0.91
MRE11P49959 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MRE11P49959 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
MRE11P49959 AL390719.1-204ENST00000412397 1219 ntBASIC20.72■□□□□ 0.91
MRE11P49959 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.72■□□□□ 0.91
MRE11P49959 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.72■□□□□ 0.91
MRE11P49959 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC20.72■□□□□ 0.91
MRE11P49959 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.72■□□□□ 0.91
MRE11P49959 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MRE11P49959 AC133963.1-201ENST00000504166 1679 ntBASIC20.72■□□□□ 0.91
MRE11P49959 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms