Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.9■□□□□ 0.3
PTPN6P29350 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.9■□□□□ 0.3
PTPN6P29350 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN6P29350 AC008687.5-201ENST00000593746 558 ntBASIC16.9■□□□□ 0.3
PTPN6P29350 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
PTPN6P29350 AL157888.1-201ENST00000631930 593 ntBASIC16.9■□□□□ 0.3
PTPN6P29350 AC009949.1-201ENST00000623048 1830 ntBASIC16.9■□□□□ 0.3
PTPN6P29350 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN6P29350 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN6P29350 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN6P29350 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN6P29350 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN6P29350 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN6P29350 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN6P29350 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN6P29350 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN6P29350 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.9■□□□□ 0.3
PTPN6P29350 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN6P29350 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN6P29350 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
PTPN6P29350 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
PTPN6P29350 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.89■□□□□ 0.3
PTPN6P29350 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
PTPN6P29350 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
PTPN6P29350 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.89■□□□□ 0.3
PTPN6P29350 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.3
PTPN6P29350 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
PTPN6P29350 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.89■□□□□ 0.29
PTPN6P29350 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN6P29350 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN6P29350 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN6P29350 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN6P29350 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
PTPN6P29350 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN6P29350 RASA4DP-201ENST00000460726 1199 ntBASIC16.89■□□□□ 0.29
PTPN6P29350 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
PTPN6P29350 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.89■□□□□ 0.29
PTPN6P29350 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.89■□□□□ 0.29
PTPN6P29350 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN6P29350 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.89■□□□□ 0.29
PTPN6P29350 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN6P29350 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.89■□□□□ 0.29
PTPN6P29350 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.89■□□□□ 0.29
PTPN6P29350 AD000864.1-201ENST00000624076 2295 ntBASIC16.89■□□□□ 0.29
PTPN6P29350 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.89■□□□□ 0.29
PTPN6P29350 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.89■□□□□ 0.29
PTPN6P29350 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.89■□□□□ 0.29
PTPN6P29350 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN6P29350 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN6P29350 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN6P29350 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN6P29350 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
PTPN6P29350 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
PTPN6P29350 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.88■□□□□ 0.29
PTPN6P29350 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.88■□□□□ 0.29
PTPN6P29350 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.88■□□□□ 0.29
PTPN6P29350 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN6P29350 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.88■□□□□ 0.29
PTPN6P29350 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN6P29350 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
PTPN6P29350 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN6P29350 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN6P29350 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN6P29350 AC112907.2-201ENST00000448639 330 ntBASIC16.88■□□□□ 0.29
PTPN6P29350 AL671277.2-201ENST00000458060 996 ntBASIC16.88■□□□□ 0.29
PTPN6P29350 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.88■□□□□ 0.29
PTPN6P29350 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.88■□□□□ 0.29
PTPN6P29350 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.88■□□□□ 0.29
PTPN6P29350 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN6P29350 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.88■□□□□ 0.29
PTPN6P29350 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.88■□□□□ 0.29
PTPN6P29350 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.88■□□□□ 0.29
PTPN6P29350 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.88■□□□□ 0.29
PTPN6P29350 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN6P29350 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN6P29350 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
PTPN6P29350 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN6P29350 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN6P29350 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN6P29350 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN6P29350 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.88■□□□□ 0.29
PTPN6P29350 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.88■□□□□ 0.29
PTPN6P29350 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN6P29350 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN6P29350 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
PTPN6P29350 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.87■□□□□ 0.29
PTPN6P29350 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
PTPN6P29350 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN6P29350 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN6P29350 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN6P29350 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.87■□□□□ 0.29
PTPN6P29350 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN6P29350 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN6P29350 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN6P29350 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN6P29350 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
PTPN6P29350 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.87■□□□□ 0.29
PTPN6P29350 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.87■□□□□ 0.29
PTPN6P29350 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.87■□□□□ 0.29
PTPN6P29350 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms