Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGB3O15347 AC046158.3-201ENST00000624947 2558 ntBASIC14.35□□□□□ -0.11
HMGB3O15347 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGB3O15347 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC14.35□□□□□ -0.11
HMGB3O15347 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGB3O15347 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HMGB3O15347 RCC2P3-201ENST00000418112 1537 ntBASIC14.35□□□□□ -0.11
HMGB3O15347 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HMGB3O15347 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HMGB3O15347 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGB3O15347 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.34□□□□□ -0.11
HMGB3O15347 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
HMGB3O15347 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC14.34□□□□□ -0.11
HMGB3O15347 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC14.34□□□□□ -0.11
HMGB3O15347 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC14.34□□□□□ -0.11
HMGB3O15347 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
HMGB3O15347 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC14.34□□□□□ -0.11
HMGB3O15347 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
HMGB3O15347 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC14.34□□□□□ -0.11
HMGB3O15347 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC14.34□□□□□ -0.11
HMGB3O15347 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC14.34□□□□□ -0.11
HMGB3O15347 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC14.34□□□□□ -0.11
HMGB3O15347 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
HMGB3O15347 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC14.34□□□□□ -0.11
HMGB3O15347 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC14.34□□□□□ -0.11
HMGB3O15347 MIPEPP3-201ENST00000412105 444 ntBASIC14.34□□□□□ -0.11
HMGB3O15347 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC14.34□□□□□ -0.11
HMGB3O15347 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC14.34□□□□□ -0.11
HMGB3O15347 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 GATS-209ENST00000454084 1030 ntTSL 3 BASIC14.34□□□□□ -0.11
HMGB3O15347 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC14.34□□□□□ -0.11
HMGB3O15347 SLC29A4P2-201ENST00000504749 1089 ntBASIC14.34□□□□□ -0.11
HMGB3O15347 BET1L-207ENST00000529614 560 ntTSL 5 BASIC14.34□□□□□ -0.11
HMGB3O15347 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC14.34□□□□□ -0.11
HMGB3O15347 AL050303.2-201ENST00000619798 666 ntBASIC14.34□□□□□ -0.11
HMGB3O15347 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 ACE-204ENST00000428043 5120 ntTSL 2 BASIC14.34□□□□□ -0.11
HMGB3O15347 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC14.34□□□□□ -0.11
HMGB3O15347 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC14.34□□□□□ -0.11
HMGB3O15347 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC14.34□□□□□ -0.11
HMGB3O15347 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC14.34□□□□□ -0.11
HMGB3O15347 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HMGB3O15347 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
HMGB3O15347 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC14.33□□□□□ -0.11
HMGB3O15347 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HMGB3O15347 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
HMGB3O15347 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
HMGB3O15347 KRT8P11-201ENST00000409686 1436 ntBASIC14.33□□□□□ -0.11
HMGB3O15347 KRT8P3-201ENST00000519669 1449 ntBASIC14.33□□□□□ -0.11
HMGB3O15347 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC14.33□□□□□ -0.11
HMGB3O15347 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HMGB3O15347 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGB3O15347 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGB3O15347 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC14.33□□□□□ -0.12
HMGB3O15347 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC14.33□□□□□ -0.12
HMGB3O15347 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGB3O15347 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGB3O15347 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HMGB3O15347 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGB3O15347 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC14.33□□□□□ -0.12
HMGB3O15347 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGB3O15347 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGB3O15347 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGB3O15347 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HMGB3O15347 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC14.33□□□□□ -0.12
HMGB3O15347 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC14.33□□□□□ -0.12
HMGB3O15347 AC091874.3-201ENST00000512672 1195 ntBASIC14.33□□□□□ -0.12
HMGB3O15347 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC14.33□□□□□ -0.12
HMGB3O15347 MIR6821-201ENST00000617625 74 ntBASIC14.33□□□□□ -0.12
HMGB3O15347 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGB3O15347 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
HMGB3O15347 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGB3O15347 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGB3O15347 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC14.33□□□□□ -0.12
HMGB3O15347 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC14.33□□□□□ -0.12
HMGB3O15347 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGB3O15347 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
HMGB3O15347 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGB3O15347 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms