Protein–RNA interactions for Protein: Q9Y5I1

PCDHA11, Protocadherin alpha-11, humanhuman

Predictions only

Length 949 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11Q9Y5I1 MIR3960-201ENST00000583311 91 ntBASIC27■■□□□ 1.91
PCDHA11Q9Y5I1 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC27■■□□□ 1.91
PCDHA11Q9Y5I1 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC27■■□□□ 1.91
PCDHA11Q9Y5I1 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC26.99■■□□□ 1.91
PCDHA11Q9Y5I1 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC26.99■■□□□ 1.91
PCDHA11Q9Y5I1 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC26.99■■□□□ 1.91
PCDHA11Q9Y5I1 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
PCDHA11Q9Y5I1 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC26.99■■□□□ 1.91
PCDHA11Q9Y5I1 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
PCDHA11Q9Y5I1 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC26.98■■□□□ 1.91
PCDHA11Q9Y5I1 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC26.98■■□□□ 1.91
PCDHA11Q9Y5I1 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC26.98■■□□□ 1.91
PCDHA11Q9Y5I1 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC26.98■■□□□ 1.91
PCDHA11Q9Y5I1 AC139426.1-201ENST00000568218 2529 ntBASIC26.97■■□□□ 1.91
PCDHA11Q9Y5I1 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC26.97■■□□□ 1.91
PCDHA11Q9Y5I1 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
PCDHA11Q9Y5I1 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
PCDHA11Q9Y5I1 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
PCDHA11Q9Y5I1 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC26.97■■□□□ 1.91
PCDHA11Q9Y5I1 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
PCDHA11Q9Y5I1 PRTG-204ENST00000561292 833 ntTSL 3 BASIC26.96■■□□□ 1.91
PCDHA11Q9Y5I1 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC26.96■■□□□ 1.91
PCDHA11Q9Y5I1 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
PCDHA11Q9Y5I1 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC26.95■■□□□ 1.9
PCDHA11Q9Y5I1 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
PCDHA11Q9Y5I1 IDNK-201ENST00000376417 511 ntTSL 5 BASIC26.94■■□□□ 1.9
PCDHA11Q9Y5I1 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
PCDHA11Q9Y5I1 MIR935-201ENST00000401179 91 ntBASIC26.94■■□□□ 1.9
PCDHA11Q9Y5I1 AC103724.3-201ENST00000564481 992 ntBASIC26.94■■□□□ 1.9
PCDHA11Q9Y5I1 AL031848.2-201ENST00000607670 837 ntBASIC26.94■■□□□ 1.9
PCDHA11Q9Y5I1 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC26.94■■□□□ 1.9
PCDHA11Q9Y5I1 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
PCDHA11Q9Y5I1 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC26.93■■□□□ 1.9
PCDHA11Q9Y5I1 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC26.93■■□□□ 1.9
PCDHA11Q9Y5I1 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC26.92■■□□□ 1.9
PCDHA11Q9Y5I1 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
PCDHA11Q9Y5I1 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC26.92■■□□□ 1.9
PCDHA11Q9Y5I1 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
PCDHA11Q9Y5I1 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC26.92■■□□□ 1.9
PCDHA11Q9Y5I1 SHF-206ENST00000560471 2499 ntTSL 5 BASIC26.92■■□□□ 1.9
PCDHA11Q9Y5I1 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC26.91■■□□□ 1.9
PCDHA11Q9Y5I1 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC26.91■■□□□ 1.9
PCDHA11Q9Y5I1 IDNK-203ENST00000405990 629 ntTSL 2 BASIC26.91■■□□□ 1.9
PCDHA11Q9Y5I1 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC26.91■■□□□ 1.9
PCDHA11Q9Y5I1 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
PCDHA11Q9Y5I1 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC26.9■■□□□ 1.9
PCDHA11Q9Y5I1 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
PCDHA11Q9Y5I1 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC26.9■■□□□ 1.9
PCDHA11Q9Y5I1 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC26.9■■□□□ 1.9
PCDHA11Q9Y5I1 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
PCDHA11Q9Y5I1 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
PCDHA11Q9Y5I1 AP004833.2-201ENST00000532228 1454 ntBASIC26.89■■□□□ 1.9
PCDHA11Q9Y5I1 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC26.89■■□□□ 1.9
PCDHA11Q9Y5I1 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC26.89■■□□□ 1.9
PCDHA11Q9Y5I1 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC26.89■■□□□ 1.9
PCDHA11Q9Y5I1 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
PCDHA11Q9Y5I1 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
PCDHA11Q9Y5I1 MTX2-204ENST00000443241 799 ntTSL 3 BASIC26.88■■□□□ 1.89
PCDHA11Q9Y5I1 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC26.87■■□□□ 1.89
PCDHA11Q9Y5I1 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC26.87■■□□□ 1.89
PCDHA11Q9Y5I1 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
PCDHA11Q9Y5I1 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
PCDHA11Q9Y5I1 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
PCDHA11Q9Y5I1 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC26.86■■□□□ 1.89
PCDHA11Q9Y5I1 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
PCDHA11Q9Y5I1 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC26.85■■□□□ 1.89
PCDHA11Q9Y5I1 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC26.85■■□□□ 1.89
PCDHA11Q9Y5I1 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC26.85■■□□□ 1.89
PCDHA11Q9Y5I1 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC26.85■■□□□ 1.89
PCDHA11Q9Y5I1 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
PCDHA11Q9Y5I1 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC26.85■■□□□ 1.89
PCDHA11Q9Y5I1 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
PCDHA11Q9Y5I1 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
PCDHA11Q9Y5I1 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC26.84■■□□□ 1.89
PCDHA11Q9Y5I1 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
PCDHA11Q9Y5I1 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC26.84■■□□□ 1.89
PCDHA11Q9Y5I1 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC26.84■■□□□ 1.89
PCDHA11Q9Y5I1 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
PCDHA11Q9Y5I1 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC26.83■■□□□ 1.89
PCDHA11Q9Y5I1 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
PCDHA11Q9Y5I1 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC26.82■■□□□ 1.88
PCDHA11Q9Y5I1 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC26.82■■□□□ 1.88
PCDHA11Q9Y5I1 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
PCDHA11Q9Y5I1 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
PCDHA11Q9Y5I1 AC239859.2-201ENST00000444165 318 ntBASIC26.81■■□□□ 1.88
PCDHA11Q9Y5I1 RNF146-205ENST00000477776 762 ntTSL 3 BASIC26.81■■□□□ 1.88
PCDHA11Q9Y5I1 LSM7-203ENST00000585409 512 ntTSL 2 BASIC26.81■■□□□ 1.88
PCDHA11Q9Y5I1 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
PCDHA11Q9Y5I1 AC008406.3-201ENST00000620001 1374 ntBASIC26.8■■□□□ 1.88
PCDHA11Q9Y5I1 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
PCDHA11Q9Y5I1 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
PCDHA11Q9Y5I1 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC26.78■■□□□ 1.88
PCDHA11Q9Y5I1 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC26.78■■□□□ 1.88
PCDHA11Q9Y5I1 AC100797.4-201ENST00000631653 1827 ntBASIC26.78■■□□□ 1.88
PCDHA11Q9Y5I1 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
PCDHA11Q9Y5I1 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
PCDHA11Q9Y5I1 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.77■■□□□ 1.88
PCDHA11Q9Y5I1 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
PCDHA11Q9Y5I1 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC26.77■■□□□ 1.88
PCDHA11Q9Y5I1 AC019171.1-201ENST00000601251 1056 ntBASIC26.77■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms