Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.73
TTC28Q96AY4 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC25.82■■□□□ 1.72
TTC28Q96AY4 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC25.82■■□□□ 1.72
TTC28Q96AY4 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC25.82■■□□□ 1.72
TTC28Q96AY4 MIR3621-201ENST00000580529 85 ntBASIC25.82■■□□□ 1.72
TTC28Q96AY4 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
TTC28Q96AY4 PFN2-211ENST00000489155 636 ntTSL 4 BASIC25.81■■□□□ 1.72
TTC28Q96AY4 MIR4466-201ENST00000606121 54 ntBASIC25.81■■□□□ 1.72
TTC28Q96AY4 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC25.81■■□□□ 1.72
TTC28Q96AY4 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
TTC28Q96AY4 SUDS3P1-201ENST00000505831 966 ntBASIC25.81■■□□□ 1.72
TTC28Q96AY4 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC25.81■■□□□ 1.72
TTC28Q96AY4 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC25.81■■□□□ 1.72
TTC28Q96AY4 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
TTC28Q96AY4 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
TTC28Q96AY4 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
TTC28Q96AY4 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC25.8■■□□□ 1.72
TTC28Q96AY4 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC25.79■■□□□ 1.72
TTC28Q96AY4 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
TTC28Q96AY4 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC25.79■■□□□ 1.72
TTC28Q96AY4 RPP21-222ENST00000433076 577 ntTSL 2 BASIC25.79■■□□□ 1.72
TTC28Q96AY4 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
TTC28Q96AY4 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC25.78■■□□□ 1.72
TTC28Q96AY4 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
TTC28Q96AY4 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC25.78■■□□□ 1.72
TTC28Q96AY4 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC25.78■■□□□ 1.72
TTC28Q96AY4 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
TTC28Q96AY4 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC25.77■■□□□ 1.72
TTC28Q96AY4 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
TTC28Q96AY4 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
TTC28Q96AY4 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC25.77■■□□□ 1.72
TTC28Q96AY4 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC25.76■■□□□ 1.71
TTC28Q96AY4 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC25.76■■□□□ 1.71
TTC28Q96AY4 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
TTC28Q96AY4 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC25.76■■□□□ 1.71
TTC28Q96AY4 ANKRD20A6P-201ENST00000618763 204 ntBASIC25.76■■□□□ 1.71
TTC28Q96AY4 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC25.76■■□□□ 1.71
TTC28Q96AY4 AL162430.1-201ENST00000480705 870 ntBASIC25.75■■□□□ 1.71
TTC28Q96AY4 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC25.75■■□□□ 1.71
TTC28Q96AY4 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC25.75■■□□□ 1.71
TTC28Q96AY4 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC25.75■■□□□ 1.71
TTC28Q96AY4 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC25.74■■□□□ 1.71
TTC28Q96AY4 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC25.74■■□□□ 1.71
TTC28Q96AY4 TK2-202ENST00000417693 1046 ntTSL 2 BASIC25.74■■□□□ 1.71
TTC28Q96AY4 SRR-208ENST00000576848 588 ntTSL 4 BASIC25.74■■□□□ 1.71
TTC28Q96AY4 AC087623.3-201ENST00000607047 1098 ntBASIC25.74■■□□□ 1.71
TTC28Q96AY4 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC25.74■■□□□ 1.71
TTC28Q96AY4 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
TTC28Q96AY4 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
TTC28Q96AY4 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
TTC28Q96AY4 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC25.73■■□□□ 1.71
TTC28Q96AY4 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC25.73■■□□□ 1.71
TTC28Q96AY4 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC25.73■■□□□ 1.71
TTC28Q96AY4 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC25.73■■□□□ 1.71
TTC28Q96AY4 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC25.73■■□□□ 1.71
TTC28Q96AY4 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
TTC28Q96AY4 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
TTC28Q96AY4 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
TTC28Q96AY4 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC25.72■■□□□ 1.71
TTC28Q96AY4 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
TTC28Q96AY4 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC25.72■■□□□ 1.71
TTC28Q96AY4 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
TTC28Q96AY4 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC25.71■■□□□ 1.71
TTC28Q96AY4 LGR4-203ENST00000480977 492 ntTSL 2 BASIC25.71■■□□□ 1.71
TTC28Q96AY4 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
TTC28Q96AY4 PARL-206ENST00000435888 1098 ntTSL 5 BASIC25.7■■□□□ 1.7
TTC28Q96AY4 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC25.7■■□□□ 1.7
TTC28Q96AY4 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC25.7■■□□□ 1.7
TTC28Q96AY4 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC25.7■■□□□ 1.7
TTC28Q96AY4 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
TTC28Q96AY4 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
TTC28Q96AY4 AL161658.1-201ENST00000623641 1967 ntBASIC25.69■■□□□ 1.7
TTC28Q96AY4 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
TTC28Q96AY4 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC25.69■■□□□ 1.7
TTC28Q96AY4 AC090192.1-201ENST00000517740 490 ntBASIC25.69■■□□□ 1.7
TTC28Q96AY4 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC25.68■■□□□ 1.7
TTC28Q96AY4 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
TTC28Q96AY4 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
TTC28Q96AY4 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
TTC28Q96AY4 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
TTC28Q96AY4 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
TTC28Q96AY4 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
TTC28Q96AY4 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC25.66■■□□□ 1.7
TTC28Q96AY4 TSPY9P-201ENST00000440215 945 ntBASIC25.66■■□□□ 1.7
TTC28Q96AY4 TSPY11P-201ENST00000442607 1045 ntBASIC25.66■■□□□ 1.7
TTC28Q96AY4 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
TTC28Q96AY4 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC25.66■■□□□ 1.7
TTC28Q96AY4 AC087393.1-201ENST00000582896 145 ntBASIC25.66■■□□□ 1.7
TTC28Q96AY4 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
TTC28Q96AY4 AC142381.2-201ENST00000566120 298 ntBASIC25.65■■□□□ 1.7
TTC28Q96AY4 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
TTC28Q96AY4 MIR3960-201ENST00000583311 91 ntBASIC25.65■■□□□ 1.7
TTC28Q96AY4 AC106739.1-201ENST00000617035 715 ntBASIC25.65■■□□□ 1.7
TTC28Q96AY4 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
TTC28Q96AY4 GLI3-203ENST00000437480 451 ntTSL 2 BASIC25.64■■□□□ 1.7
TTC28Q96AY4 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC25.64■■□□□ 1.69
TTC28Q96AY4 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC25.64■■□□□ 1.69
TTC28Q96AY4 AL031432.3-201ENST00000607698 485 ntBASIC25.64■■□□□ 1.69
TTC28Q96AY4 MIR6821-201ENST00000617625 74 ntBASIC25.63■■□□□ 1.69
TTC28Q96AY4 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC25.63■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms