Protein–RNA interactions for Protein: Q8TF05

PPP4R1, Serine/threonine-protein phosphatase 4 regulatory subunit 1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1Q8TF05 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
PPP4R1Q8TF05 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
PPP4R1Q8TF05 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC24.39■■□□□ 1.49
PPP4R1Q8TF05 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC24.39■■□□□ 1.49
PPP4R1Q8TF05 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC24.39■■□□□ 1.49
PPP4R1Q8TF05 MIR3648-2-201ENST00000581792 180 ntBASIC24.39■■□□□ 1.49
PPP4R1Q8TF05 MIR3648-1-201ENST00000615959 180 ntBASIC24.39■■□□□ 1.49
PPP4R1Q8TF05 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC24.39■■□□□ 1.49
PPP4R1Q8TF05 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
PPP4R1Q8TF05 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC24.38■■□□□ 1.49
PPP4R1Q8TF05 GDI1-215ENST00000630693 786 ntTSL 4 BASIC24.38■■□□□ 1.49
PPP4R1Q8TF05 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC24.38■■□□□ 1.49
PPP4R1Q8TF05 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
PPP4R1Q8TF05 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
PPP4R1Q8TF05 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
PPP4R1Q8TF05 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
PPP4R1Q8TF05 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
PPP4R1Q8TF05 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC24.37■■□□□ 1.49
PPP4R1Q8TF05 DUX4L11-201ENST00000611504 1267 ntBASIC24.37■■□□□ 1.49
PPP4R1Q8TF05 DUX4L12-201ENST00000614593 1267 ntBASIC24.37■■□□□ 1.49
PPP4R1Q8TF05 DUX4L14-201ENST00000621227 1267 ntBASIC24.37■■□□□ 1.49
PPP4R1Q8TF05 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
PPP4R1Q8TF05 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
PPP4R1Q8TF05 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
PPP4R1Q8TF05 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
PPP4R1Q8TF05 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
PPP4R1Q8TF05 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
PPP4R1Q8TF05 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
PPP4R1Q8TF05 AC016575.1-201ENST00000607026 382 ntBASIC24.36■■□□□ 1.49
PPP4R1Q8TF05 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
PPP4R1Q8TF05 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
PPP4R1Q8TF05 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC24.35■■□□□ 1.49
PPP4R1Q8TF05 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
PPP4R1Q8TF05 PKM-204ENST00000449901 2526 ntTSL 2 BASIC24.35■■□□□ 1.49
PPP4R1Q8TF05 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC24.35■■□□□ 1.49
PPP4R1Q8TF05 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
PPP4R1Q8TF05 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC24.34■■□□□ 1.49
PPP4R1Q8TF05 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PPP4R1Q8TF05 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC24.33■■□□□ 1.49
PPP4R1Q8TF05 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
PPP4R1Q8TF05 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC24.33■■□□□ 1.49
PPP4R1Q8TF05 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC24.33■■□□□ 1.49
PPP4R1Q8TF05 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
PPP4R1Q8TF05 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
PPP4R1Q8TF05 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PPP4R1Q8TF05 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC24.32■■□□□ 1.48
PPP4R1Q8TF05 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
PPP4R1Q8TF05 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC24.31■■□□□ 1.48
PPP4R1Q8TF05 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
PPP4R1Q8TF05 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC24.31■■□□□ 1.48
PPP4R1Q8TF05 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PPP4R1Q8TF05 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
PPP4R1Q8TF05 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PPP4R1Q8TF05 CR559946.2-201ENST00000623684 991 ntBASIC24.3■■□□□ 1.48
PPP4R1Q8TF05 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PPP4R1Q8TF05 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PPP4R1Q8TF05 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
PPP4R1Q8TF05 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PPP4R1Q8TF05 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
PPP4R1Q8TF05 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC24.29■■□□□ 1.48
PPP4R1Q8TF05 PEX7-203ENST00000541292 945 ntTSL 5 BASIC24.29■■□□□ 1.48
PPP4R1Q8TF05 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
PPP4R1Q8TF05 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PPP4R1Q8TF05 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
PPP4R1Q8TF05 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
PPP4R1Q8TF05 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC24.28■■□□□ 1.48
PPP4R1Q8TF05 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PPP4R1Q8TF05 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
PPP4R1Q8TF05 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
PPP4R1Q8TF05 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
PPP4R1Q8TF05 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
PPP4R1Q8TF05 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
PPP4R1Q8TF05 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
PPP4R1Q8TF05 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
PPP4R1Q8TF05 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC24.27■■□□□ 1.48
PPP4R1Q8TF05 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
PPP4R1Q8TF05 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
PPP4R1Q8TF05 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC24.26■■□□□ 1.47
PPP4R1Q8TF05 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
PPP4R1Q8TF05 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC24.26■■□□□ 1.47
PPP4R1Q8TF05 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC24.25■■□□□ 1.47
PPP4R1Q8TF05 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
PPP4R1Q8TF05 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
PPP4R1Q8TF05 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
PPP4R1Q8TF05 SNAI3-AS1-204ENST00000567997 2048 ntBASIC24.25■■□□□ 1.47
PPP4R1Q8TF05 AC142472.1-201ENST00000612013 1741 ntBASIC24.24■■□□□ 1.47
PPP4R1Q8TF05 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PPP4R1Q8TF05 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
PPP4R1Q8TF05 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
PPP4R1Q8TF05 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
PPP4R1Q8TF05 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
PPP4R1Q8TF05 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC24.23■■□□□ 1.47
PPP4R1Q8TF05 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC24.23■■□□□ 1.47
PPP4R1Q8TF05 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
PPP4R1Q8TF05 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC24.23■■□□□ 1.47
PPP4R1Q8TF05 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC24.23■■□□□ 1.47
PPP4R1Q8TF05 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC24.23■■□□□ 1.47
PPP4R1Q8TF05 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
PPP4R1Q8TF05 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
PPP4R1Q8TF05 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms