Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CCHCR1Q8TD31 WHAMMP3-201ENST00000611636 1609 ntBASIC25.43■■□□□ 1.66
CCHCR1Q8TD31 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC25.42■■□□□ 1.66
CCHCR1Q8TD31 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CCHCR1Q8TD31 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC25.42■■□□□ 1.66
CCHCR1Q8TD31 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
CCHCR1Q8TD31 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC25.41■■□□□ 1.66
CCHCR1Q8TD31 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
CCHCR1Q8TD31 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
CCHCR1Q8TD31 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
CCHCR1Q8TD31 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC25.4■■□□□ 1.66
CCHCR1Q8TD31 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
CCHCR1Q8TD31 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
CCHCR1Q8TD31 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC25.4■■□□□ 1.66
CCHCR1Q8TD31 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC25.39■■□□□ 1.66
CCHCR1Q8TD31 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
CCHCR1Q8TD31 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
CCHCR1Q8TD31 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC25.39■■□□□ 1.65
CCHCR1Q8TD31 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CCHCR1Q8TD31 AC020928.2-201ENST00000588717 2197 ntBASIC25.38■■□□□ 1.65
CCHCR1Q8TD31 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
CCHCR1Q8TD31 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CCHCR1Q8TD31 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
CCHCR1Q8TD31 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
CCHCR1Q8TD31 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
CCHCR1Q8TD31 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
CCHCR1Q8TD31 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
CCHCR1Q8TD31 HLA-V-202ENST00000446817 847 ntBASIC25.37■■□□□ 1.65
CCHCR1Q8TD31 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CCHCR1Q8TD31 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CCHCR1Q8TD31 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
CCHCR1Q8TD31 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CCHCR1Q8TD31 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
CCHCR1Q8TD31 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC25.36■■□□□ 1.65
CCHCR1Q8TD31 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
CCHCR1Q8TD31 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC25.35■■□□□ 1.65
CCHCR1Q8TD31 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC25.35■■□□□ 1.65
CCHCR1Q8TD31 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
CCHCR1Q8TD31 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CCHCR1Q8TD31 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CCHCR1Q8TD31 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CCHCR1Q8TD31 AC008813.1-201ENST00000536597 885 ntBASIC25.35■■□□□ 1.65
CCHCR1Q8TD31 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CCHCR1Q8TD31 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC25.35■■□□□ 1.65
CCHCR1Q8TD31 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CCHCR1Q8TD31 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC25.35■■□□□ 1.65
CCHCR1Q8TD31 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
CCHCR1Q8TD31 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCHCR1Q8TD31 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCHCR1Q8TD31 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC25.34■■□□□ 1.65
CCHCR1Q8TD31 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
CCHCR1Q8TD31 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
CCHCR1Q8TD31 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
CCHCR1Q8TD31 MIR639-201ENST00000384974 98 ntBASIC25.33■■□□□ 1.65
CCHCR1Q8TD31 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
CCHCR1Q8TD31 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
CCHCR1Q8TD31 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
CCHCR1Q8TD31 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
CCHCR1Q8TD31 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC25.32■■□□□ 1.64
CCHCR1Q8TD31 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
CCHCR1Q8TD31 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
CCHCR1Q8TD31 RPS2-210ENST00000530225 765 ntTSL 2 BASIC25.32■■□□□ 1.64
CCHCR1Q8TD31 MBP-237ENST00000579129 1052 ntTSL 5 BASIC25.32■■□□□ 1.64
CCHCR1Q8TD31 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
CCHCR1Q8TD31 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
CCHCR1Q8TD31 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CCHCR1Q8TD31 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC25.31■■□□□ 1.64
CCHCR1Q8TD31 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
CCHCR1Q8TD31 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
CCHCR1Q8TD31 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC25.31■■□□□ 1.64
CCHCR1Q8TD31 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
CCHCR1Q8TD31 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
CCHCR1Q8TD31 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
CCHCR1Q8TD31 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC25.3■■□□□ 1.64
CCHCR1Q8TD31 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
CCHCR1Q8TD31 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
CCHCR1Q8TD31 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
CCHCR1Q8TD31 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
CCHCR1Q8TD31 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC25.29■■□□□ 1.64
CCHCR1Q8TD31 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC25.29■■□□□ 1.64
CCHCR1Q8TD31 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
CCHCR1Q8TD31 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
CCHCR1Q8TD31 RPS2-202ENST00000526522 924 ntTSL 2 BASIC25.29■■□□□ 1.64
CCHCR1Q8TD31 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
CCHCR1Q8TD31 METRNL-202ENST00000570778 967 ntTSL 5 BASIC25.29■■□□□ 1.64
CCHCR1Q8TD31 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
CCHCR1Q8TD31 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC25.28■■□□□ 1.64
CCHCR1Q8TD31 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC25.28■■□□□ 1.64
CCHCR1Q8TD31 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC25.28■■□□□ 1.64
CCHCR1Q8TD31 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CCHCR1Q8TD31 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CCHCR1Q8TD31 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CCHCR1Q8TD31 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC25.27■■□□□ 1.64
CCHCR1Q8TD31 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
CCHCR1Q8TD31 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC25.27■■□□□ 1.64
CCHCR1Q8TD31 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC25.27■■□□□ 1.64
CCHCR1Q8TD31 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
CCHCR1Q8TD31 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
CCHCR1Q8TD31 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC25.26■■□□□ 1.63
CCHCR1Q8TD31 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC25.26■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms