Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.55■■□□□ 1.04
SGCEO43556 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SGCEO43556 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
SGCEO43556 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
SGCEO43556 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SGCEO43556 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SGCEO43556 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC21.54■■□□□ 1.04
SGCEO43556 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.54■■□□□ 1.04
SGCEO43556 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.54■■□□□ 1.04
SGCEO43556 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.54■■□□□ 1.04
SGCEO43556 AC126177.7-201ENST00000547904 679 ntBASIC21.54■■□□□ 1.04
SGCEO43556 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC21.54■■□□□ 1.04
SGCEO43556 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SGCEO43556 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SGCEO43556 CREM-210ENST00000374721 2020 ntTSL 5 BASIC21.53■■□□□ 1.04
SGCEO43556 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
SGCEO43556 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
SGCEO43556 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC21.53■■□□□ 1.04
SGCEO43556 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SGCEO43556 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.52■■□□□ 1.04
SGCEO43556 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SGCEO43556 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SGCEO43556 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SGCEO43556 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
SGCEO43556 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.52■■□□□ 1.04
SGCEO43556 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
SGCEO43556 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SGCEO43556 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SGCEO43556 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
SGCEO43556 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SGCEO43556 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.51■■□□□ 1.03
SGCEO43556 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SGCEO43556 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.51■■□□□ 1.03
SGCEO43556 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC21.5■■□□□ 1.03
SGCEO43556 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SGCEO43556 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SGCEO43556 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SGCEO43556 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SGCEO43556 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SGCEO43556 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.5■■□□□ 1.03
SGCEO43556 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SGCEO43556 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SGCEO43556 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SGCEO43556 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SGCEO43556 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SGCEO43556 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.5■■□□□ 1.03
SGCEO43556 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SGCEO43556 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SGCEO43556 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.49■■□□□ 1.03
SGCEO43556 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC21.49■■□□□ 1.03
SGCEO43556 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.49■■□□□ 1.03
SGCEO43556 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SGCEO43556 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.49■■□□□ 1.03
SGCEO43556 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.48■■□□□ 1.03
SGCEO43556 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SGCEO43556 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SGCEO43556 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SGCEO43556 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SGCEO43556 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
SGCEO43556 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC21.47■■□□□ 1.03
SGCEO43556 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC21.47■■□□□ 1.03
SGCEO43556 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.47■■□□□ 1.03
SGCEO43556 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
SGCEO43556 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
SGCEO43556 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SGCEO43556 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
SGCEO43556 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SGCEO43556 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.45■■□□□ 1.02
SGCEO43556 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SGCEO43556 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.45■■□□□ 1.02
SGCEO43556 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
SGCEO43556 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SGCEO43556 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SGCEO43556 MBP-237ENST00000579129 1052 ntTSL 5 BASIC21.44■■□□□ 1.02
SGCEO43556 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.44■■□□□ 1.02
SGCEO43556 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
SGCEO43556 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC21.43■■□□□ 1.02
SGCEO43556 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.43■■□□□ 1.02
SGCEO43556 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
SGCEO43556 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SGCEO43556 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SGCEO43556 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.43■■□□□ 1.02
SGCEO43556 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SGCEO43556 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SGCEO43556 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
SGCEO43556 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SGCEO43556 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
SGCEO43556 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SGCEO43556 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
SGCEO43556 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.42■■□□□ 1.02
SGCEO43556 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SGCEO43556 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SGCEO43556 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SGCEO43556 AL359504.2-201ENST00000605506 1601 ntBASIC21.4■■□□□ 1.02
SGCEO43556 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SGCEO43556 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SGCEO43556 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SGCEO43556 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.39■■□□□ 1.02
SGCEO43556 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.39■■□□□ 1.01
SGCEO43556 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms