Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
NPHP1O15259 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC31.11■■■□□ 2.57
NPHP1O15259 AC103834.1-201ENST00000520383 144 ntBASIC31.11■■■□□ 2.57
NPHP1O15259 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
NPHP1O15259 AC131212.1-201ENST00000613771 668 ntBASIC31.11■■■□□ 2.57
NPHP1O15259 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC31.1■■■□□ 2.57
NPHP1O15259 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
NPHP1O15259 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
NPHP1O15259 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
NPHP1O15259 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC31.1■■■□□ 2.57
NPHP1O15259 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC31.08■■■□□ 2.57
NPHP1O15259 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC31.08■■■□□ 2.57
NPHP1O15259 PVT1_1.1-201ENST00000615125 194 ntBASIC31.08■■■□□ 2.57
NPHP1O15259 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC31.08■■■□□ 2.57
NPHP1O15259 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
NPHP1O15259 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
NPHP1O15259 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
NPHP1O15259 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
NPHP1O15259 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
NPHP1O15259 AL592295.1-201ENST00000400984 884 ntBASIC31.07■■■□□ 2.56
NPHP1O15259 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
NPHP1O15259 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC31.06■■■□□ 2.56
NPHP1O15259 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
NPHP1O15259 HES6-204ENST00000409182 863 ntTSL 2 BASIC31.06■■■□□ 2.56
NPHP1O15259 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC31.06■■■□□ 2.56
NPHP1O15259 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC31.05■■■□□ 2.56
NPHP1O15259 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC31.05■■■□□ 2.56
NPHP1O15259 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC31.05■■■□□ 2.56
NPHP1O15259 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC31.05■■■□□ 2.56
NPHP1O15259 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC31.04■■■□□ 2.56
NPHP1O15259 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC31.04■■■□□ 2.56
NPHP1O15259 AL359504.2-201ENST00000605506 1601 ntBASIC31.04■■■□□ 2.56
NPHP1O15259 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
NPHP1O15259 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
NPHP1O15259 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
NPHP1O15259 MTURN-203ENST00000409688 843 ntTSL 2 BASIC31.03■■■□□ 2.56
NPHP1O15259 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC31.02■■■□□ 2.56
NPHP1O15259 IDNK-203ENST00000405990 629 ntTSL 2 BASIC31.02■■■□□ 2.56
NPHP1O15259 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC31.02■■■□□ 2.56
NPHP1O15259 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
NPHP1O15259 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC31.01■■■□□ 2.55
NPHP1O15259 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC31.01■■■□□ 2.55
NPHP1O15259 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
NPHP1O15259 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC31■■■□□ 2.55
NPHP1O15259 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC31■■■□□ 2.55
NPHP1O15259 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC31■■■□□ 2.55
NPHP1O15259 MIR4508-201ENST00000584178 70 ntBASIC31■■■□□ 2.55
NPHP1O15259 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
NPHP1O15259 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC30.99■■■□□ 2.55
NPHP1O15259 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
NPHP1O15259 THA1P-201ENST00000590384 1145 ntBASIC30.98■■■□□ 2.55
NPHP1O15259 AL031848.2-201ENST00000607670 837 ntBASIC30.98■■■□□ 2.55
NPHP1O15259 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
NPHP1O15259 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC30.98■■■□□ 2.55
NPHP1O15259 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC30.98■■■□□ 2.55
NPHP1O15259 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC30.97■■■□□ 2.55
NPHP1O15259 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC30.97■■■□□ 2.55
NPHP1O15259 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC30.97■■■□□ 2.55
NPHP1O15259 GUSBP5-201ENST00000418136 578 ntBASIC30.97■■■□□ 2.55
NPHP1O15259 OR2A1-AS1-204ENST00000470435 602 ntBASIC30.97■■■□□ 2.55
NPHP1O15259 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
NPHP1O15259 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC30.96■■■□□ 2.55
NPHP1O15259 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
NPHP1O15259 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
NPHP1O15259 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC30.95■■■□□ 2.55
NPHP1O15259 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC30.95■■■□□ 2.55
NPHP1O15259 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC30.94■■■□□ 2.54
NPHP1O15259 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC30.94■■■□□ 2.54
NPHP1O15259 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC30.94■■■□□ 2.54
NPHP1O15259 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC30.93■■■□□ 2.54
NPHP1O15259 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC30.93■■■□□ 2.54
NPHP1O15259 AC103724.3-201ENST00000564481 992 ntBASIC30.93■■■□□ 2.54
NPHP1O15259 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
NPHP1O15259 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC30.92■■■□□ 2.54
NPHP1O15259 IDNK-201ENST00000376417 511 ntTSL 5 BASIC30.92■■■□□ 2.54
NPHP1O15259 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
NPHP1O15259 MTX2-204ENST00000443241 799 ntTSL 3 BASIC30.92■■■□□ 2.54
NPHP1O15259 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
NPHP1O15259 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
NPHP1O15259 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
NPHP1O15259 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC30.92■■■□□ 2.54
NPHP1O15259 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
NPHP1O15259 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC30.91■■■□□ 2.54
NPHP1O15259 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
NPHP1O15259 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC30.9■■■□□ 2.54
NPHP1O15259 PRTG-204ENST00000561292 833 ntTSL 3 BASIC30.9■■■□□ 2.54
NPHP1O15259 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
NPHP1O15259 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC30.89■■■□□ 2.54
NPHP1O15259 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
NPHP1O15259 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
NPHP1O15259 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC30.89■■■□□ 2.54
NPHP1O15259 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC30.89■■■□□ 2.54
NPHP1O15259 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC30.89■■■□□ 2.53
NPHP1O15259 WHAMMP3-201ENST00000611636 1609 ntBASIC30.88■■■□□ 2.53
NPHP1O15259 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC30.88■■■□□ 2.53
NPHP1O15259 AC019069.1-201ENST00000610008 1333 ntBASIC30.88■■■□□ 2.53
NPHP1O15259 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
NPHP1O15259 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC30.86■■■□□ 2.53
NPHP1O15259 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
NPHP1O15259 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms