Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC20.7■□□□□ 0.9
SDCBPO00560 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
SDCBPO00560 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SDCBPO00560 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SDCBPO00560 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SDCBPO00560 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SDCBPO00560 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SDCBPO00560 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SDCBPO00560 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC20.69■□□□□ 0.9
SDCBPO00560 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC20.69■□□□□ 0.9
SDCBPO00560 LINC01971-201ENST00000617888 1048 ntBASIC20.69■□□□□ 0.9
SDCBPO00560 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.69■□□□□ 0.9
SDCBPO00560 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SDCBPO00560 MLEC-202ENST00000412616 841 ntTSL 3 BASIC20.68■□□□□ 0.9
SDCBPO00560 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SDCBPO00560 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC20.68■□□□□ 0.9
SDCBPO00560 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SDCBPO00560 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
SDCBPO00560 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SDCBPO00560 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
SDCBPO00560 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC20.67■□□□□ 0.9
SDCBPO00560 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC20.67■□□□□ 0.9
SDCBPO00560 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SDCBPO00560 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
SDCBPO00560 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.67■□□□□ 0.9
SDCBPO00560 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SDCBPO00560 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
SDCBPO00560 PEX7-203ENST00000541292 945 ntTSL 5 BASIC20.66■□□□□ 0.9
SDCBPO00560 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC20.66■□□□□ 0.9
SDCBPO00560 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SDCBPO00560 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SDCBPO00560 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC20.66■□□□□ 0.9
SDCBPO00560 AC093323.1-202ENST00000635031 2045 ntBASIC20.66■□□□□ 0.9
SDCBPO00560 CEBPA-AS1-201ENST00000592982 2198 ntBASIC20.65■□□□□ 0.9
SDCBPO00560 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SDCBPO00560 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SDCBPO00560 CHML-204ENST00000638121 920 ntTSL 2 BASIC20.65■□□□□ 0.9
SDCBPO00560 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SDCBPO00560 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
SDCBPO00560 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.64■□□□□ 0.89
SDCBPO00560 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SDCBPO00560 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SDCBPO00560 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SDCBPO00560 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SDCBPO00560 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SDCBPO00560 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SDCBPO00560 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SDCBPO00560 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SDCBPO00560 AC142472.1-201ENST00000612013 1741 ntBASIC20.63■□□□□ 0.89
SDCBPO00560 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
SDCBPO00560 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SDCBPO00560 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.63■□□□□ 0.89
SDCBPO00560 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SDCBPO00560 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SDCBPO00560 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.62■□□□□ 0.89
SDCBPO00560 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SDCBPO00560 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.61■□□□□ 0.89
SDCBPO00560 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SDCBPO00560 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SDCBPO00560 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SDCBPO00560 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SDCBPO00560 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
SDCBPO00560 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SDCBPO00560 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SDCBPO00560 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SDCBPO00560 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SDCBPO00560 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SDCBPO00560 ZNRF2P2-203ENST00000454624 420 ntBASIC20.6■□□□□ 0.89
SDCBPO00560 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC20.6■□□□□ 0.89
SDCBPO00560 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC20.6■□□□□ 0.89
SDCBPO00560 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SDCBPO00560 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SDCBPO00560 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SDCBPO00560 DUX4L13-201ENST00000554103 1267 ntBASIC20.59■□□□□ 0.89
SDCBPO00560 DUX4L15-201ENST00000611059 1267 ntBASIC20.59■□□□□ 0.89
SDCBPO00560 DUX4L23-201ENST00000615195 1269 ntBASIC20.59■□□□□ 0.89
SDCBPO00560 DUX4L24-201ENST00000617576 1269 ntBASIC20.59■□□□□ 0.89
SDCBPO00560 DUX4L22-201ENST00000618238 1269 ntBASIC20.59■□□□□ 0.89
SDCBPO00560 DUX4L20-201ENST00000619712 1269 ntBASIC20.59■□□□□ 0.89
SDCBPO00560 DUX4L21-201ENST00000622058 1269 ntBASIC20.59■□□□□ 0.89
SDCBPO00560 DUX4L10-201ENST00000622460 1267 ntBASIC20.59■□□□□ 0.89
SDCBPO00560 DUX4L25-201ENST00000624915 1269 ntBASIC20.59■□□□□ 0.89
SDCBPO00560 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SDCBPO00560 CHST11-202ENST00000546689 756 ntTSL 2 BASIC20.58■□□□□ 0.89
SDCBPO00560 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC20.58■□□□□ 0.89
SDCBPO00560 DUX4L11-201ENST00000611504 1267 ntBASIC20.58■□□□□ 0.89
SDCBPO00560 DUX4L12-201ENST00000614593 1267 ntBASIC20.58■□□□□ 0.89
SDCBPO00560 DUX4L14-201ENST00000621227 1267 ntBASIC20.58■□□□□ 0.89
SDCBPO00560 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SDCBPO00560 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SDCBPO00560 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SDCBPO00560 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SDCBPO00560 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SDCBPO00560 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SDCBPO00560 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SDCBPO00560 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC20.57■□□□□ 0.88
SDCBPO00560 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SDCBPO00560 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
SDCBPO00560 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SDCBPO00560 RPS2-210ENST00000530225 765 ntTSL 2 BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms