Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
UPK1AO00322 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC23.29■■□□□ 1.32
UPK1AO00322 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
UPK1AO00322 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.28■■□□□ 1.32
UPK1AO00322 DUSP8P4-201ENST00000399538 1761 ntBASIC23.28■■□□□ 1.32
UPK1AO00322 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
UPK1AO00322 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
UPK1AO00322 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
UPK1AO00322 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
UPK1AO00322 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.27■■□□□ 1.32
UPK1AO00322 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
UPK1AO00322 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
UPK1AO00322 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC23.26■■□□□ 1.31
UPK1AO00322 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.26■■□□□ 1.31
UPK1AO00322 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.26■■□□□ 1.31
UPK1AO00322 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
UPK1AO00322 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.26■■□□□ 1.31
UPK1AO00322 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.26■■□□□ 1.31
UPK1AO00322 HLA-V-202ENST00000446817 847 ntBASIC23.26■■□□□ 1.31
UPK1AO00322 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
UPK1AO00322 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
UPK1AO00322 AC093323.1-202ENST00000635031 2045 ntBASIC23.25■■□□□ 1.31
UPK1AO00322 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
UPK1AO00322 AC016575.1-201ENST00000607026 382 ntBASIC23.25■■□□□ 1.31
UPK1AO00322 AC148477.6-201ENST00000623746 465 ntBASIC23.25■■□□□ 1.31
UPK1AO00322 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
UPK1AO00322 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC23.25■■□□□ 1.31
UPK1AO00322 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
UPK1AO00322 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
UPK1AO00322 MIR219A2-201ENST00000608502 1504 ntBASIC23.24■■□□□ 1.31
UPK1AO00322 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC23.24■■□□□ 1.31
UPK1AO00322 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
UPK1AO00322 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC23.24■■□□□ 1.31
UPK1AO00322 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC23.24■■□□□ 1.31
UPK1AO00322 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
UPK1AO00322 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.23■■□□□ 1.31
UPK1AO00322 CHST11-203ENST00000547956 936 ntTSL 2 BASIC23.23■■□□□ 1.31
UPK1AO00322 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
UPK1AO00322 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
UPK1AO00322 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
UPK1AO00322 WHAMMP3-201ENST00000611636 1609 ntBASIC23.22■■□□□ 1.31
UPK1AO00322 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
UPK1AO00322 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
UPK1AO00322 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
UPK1AO00322 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.22■■□□□ 1.31
UPK1AO00322 AC092803.2-201ENST00000564287 1899 ntBASIC23.22■■□□□ 1.31
UPK1AO00322 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.21■■□□□ 1.31
UPK1AO00322 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
UPK1AO00322 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
UPK1AO00322 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.21■■□□□ 1.31
UPK1AO00322 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.21■■□□□ 1.31
UPK1AO00322 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
UPK1AO00322 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
UPK1AO00322 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.2■■□□□ 1.3
UPK1AO00322 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
UPK1AO00322 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
UPK1AO00322 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
UPK1AO00322 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
UPK1AO00322 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC23.19■■□□□ 1.3
UPK1AO00322 PVT1-219ENST00000523427 938 ntTSL 3 BASIC23.19■■□□□ 1.3
UPK1AO00322 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
UPK1AO00322 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
UPK1AO00322 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
UPK1AO00322 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
UPK1AO00322 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC23.18■■□□□ 1.3
UPK1AO00322 METRNL-202ENST00000570778 967 ntTSL 5 BASIC23.18■■□□□ 1.3
UPK1AO00322 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
UPK1AO00322 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
UPK1AO00322 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
UPK1AO00322 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
UPK1AO00322 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
UPK1AO00322 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC23.16■■□□□ 1.3
UPK1AO00322 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
UPK1AO00322 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
UPK1AO00322 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
UPK1AO00322 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
UPK1AO00322 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
UPK1AO00322 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
UPK1AO00322 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC23.15■■□□□ 1.3
UPK1AO00322 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.15■■□□□ 1.3
UPK1AO00322 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
UPK1AO00322 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC23.14■■□□□ 1.3
UPK1AO00322 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
UPK1AO00322 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
UPK1AO00322 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.14■■□□□ 1.29
UPK1AO00322 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC23.14■■□□□ 1.29
UPK1AO00322 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.29
UPK1AO00322 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
UPK1AO00322 AP004609.3-201ENST00000610705 1884 ntBASIC23.13■■□□□ 1.29
UPK1AO00322 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
UPK1AO00322 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.13■■□□□ 1.29
UPK1AO00322 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
UPK1AO00322 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
UPK1AO00322 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
UPK1AO00322 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC23.13■■□□□ 1.29
UPK1AO00322 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
UPK1AO00322 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
UPK1AO00322 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
UPK1AO00322 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
UPK1AO00322 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 138.6 ms