Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
SMIM28A0A1B0GU29 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SMIM28A0A1B0GU29 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
SMIM28A0A1B0GU29 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SMIM28A0A1B0GU29 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC26.59■■□□□ 1.85
SMIM28A0A1B0GU29 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC26.59■■□□□ 1.85
SMIM28A0A1B0GU29 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
SMIM28A0A1B0GU29 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
SMIM28A0A1B0GU29 AL033527.3-201ENST00000566366 1196 ntBASIC26.59■■□□□ 1.85
SMIM28A0A1B0GU29 RAP2CP1-202ENST00000605179 643 ntBASIC26.59■■□□□ 1.85
SMIM28A0A1B0GU29 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
SMIM28A0A1B0GU29 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
SMIM28A0A1B0GU29 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
SMIM28A0A1B0GU29 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
SMIM28A0A1B0GU29 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SMIM28A0A1B0GU29 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SMIM28A0A1B0GU29 AC004987.1-201ENST00000428627 508 ntBASIC26.58■■□□□ 1.85
SMIM28A0A1B0GU29 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC26.58■■□□□ 1.85
SMIM28A0A1B0GU29 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC26.57■■□□□ 1.84
SMIM28A0A1B0GU29 HES4-204ENST00000484667 667 ntTSL 3 BASIC26.56■■□□□ 1.84
SMIM28A0A1B0GU29 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
SMIM28A0A1B0GU29 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC26.56■■□□□ 1.84
SMIM28A0A1B0GU29 AC129492.7-201ENST00000622992 756 ntBASIC26.56■■□□□ 1.84
SMIM28A0A1B0GU29 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC26.56■■□□□ 1.84
SMIM28A0A1B0GU29 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SMIM28A0A1B0GU29 ATP5G2P3-201ENST00000429083 425 ntBASIC26.55■■□□□ 1.84
SMIM28A0A1B0GU29 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SMIM28A0A1B0GU29 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SMIM28A0A1B0GU29 TSPY13P-201ENST00000338964 914 ntBASIC26.53■■□□□ 1.84
SMIM28A0A1B0GU29 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC26.53■■□□□ 1.84
SMIM28A0A1B0GU29 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC26.52■■□□□ 1.84
SMIM28A0A1B0GU29 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC26.52■■□□□ 1.84
SMIM28A0A1B0GU29 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC26.51■■□□□ 1.83
SMIM28A0A1B0GU29 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC26.51■■□□□ 1.83
SMIM28A0A1B0GU29 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
SMIM28A0A1B0GU29 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
SMIM28A0A1B0GU29 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
SMIM28A0A1B0GU29 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC26.5■■□□□ 1.83
SMIM28A0A1B0GU29 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC26.5■■□□□ 1.83
SMIM28A0A1B0GU29 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC26.5■■□□□ 1.83
SMIM28A0A1B0GU29 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC26.5■■□□□ 1.83
SMIM28A0A1B0GU29 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
SMIM28A0A1B0GU29 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
SMIM28A0A1B0GU29 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
SMIM28A0A1B0GU29 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
SMIM28A0A1B0GU29 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
SMIM28A0A1B0GU29 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC26.48■■□□□ 1.83
SMIM28A0A1B0GU29 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
SMIM28A0A1B0GU29 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SMIM28A0A1B0GU29 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC26.48■■□□□ 1.83
SMIM28A0A1B0GU29 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
SMIM28A0A1B0GU29 SHF-208ENST00000560734 1731 ntTSL 3 BASIC26.48■■□□□ 1.83
SMIM28A0A1B0GU29 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
SMIM28A0A1B0GU29 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
SMIM28A0A1B0GU29 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
SMIM28A0A1B0GU29 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC26.46■■□□□ 1.83
SMIM28A0A1B0GU29 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
SMIM28A0A1B0GU29 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
SMIM28A0A1B0GU29 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
SMIM28A0A1B0GU29 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
SMIM28A0A1B0GU29 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC26.46■■□□□ 1.83
SMIM28A0A1B0GU29 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
SMIM28A0A1B0GU29 GUK1-208ENST00000366728 842 ntTSL 2 BASIC26.45■■□□□ 1.82
SMIM28A0A1B0GU29 DUX4L18-201ENST00000553347 1267 ntBASIC26.45■■□□□ 1.82
SMIM28A0A1B0GU29 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
SMIM28A0A1B0GU29 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
SMIM28A0A1B0GU29 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC26.45■■□□□ 1.82
SMIM28A0A1B0GU29 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC26.45■■□□□ 1.82
SMIM28A0A1B0GU29 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC26.44■■□□□ 1.82
SMIM28A0A1B0GU29 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
SMIM28A0A1B0GU29 SPCS2P3-201ENST00000500401 656 ntBASIC26.44■■□□□ 1.82
SMIM28A0A1B0GU29 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC26.44■■□□□ 1.82
SMIM28A0A1B0GU29 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
SMIM28A0A1B0GU29 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
SMIM28A0A1B0GU29 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
SMIM28A0A1B0GU29 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
SMIM28A0A1B0GU29 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
SMIM28A0A1B0GU29 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
SMIM28A0A1B0GU29 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC26.43■■□□□ 1.82
SMIM28A0A1B0GU29 DUX4L9-201ENST00000449051 1259 ntBASIC26.43■■□□□ 1.82
SMIM28A0A1B0GU29 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC26.43■■□□□ 1.82
SMIM28A0A1B0GU29 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC26.43■■□□□ 1.82
SMIM28A0A1B0GU29 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC26.42■■□□□ 1.82
SMIM28A0A1B0GU29 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC26.42■■□□□ 1.82
SMIM28A0A1B0GU29 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC26.42■■□□□ 1.82
SMIM28A0A1B0GU29 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC26.42■■□□□ 1.82
SMIM28A0A1B0GU29 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
SMIM28A0A1B0GU29 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
SMIM28A0A1B0GU29 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
SMIM28A0A1B0GU29 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC26.41■■□□□ 1.82
SMIM28A0A1B0GU29 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC26.41■■□□□ 1.82
SMIM28A0A1B0GU29 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC26.41■■□□□ 1.82
SMIM28A0A1B0GU29 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
SMIM28A0A1B0GU29 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC26.4■■□□□ 1.82
SMIM28A0A1B0GU29 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
SMIM28A0A1B0GU29 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC26.39■■□□□ 1.82
SMIM28A0A1B0GU29 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.82
SMIM28A0A1B0GU29 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
SMIM28A0A1B0GU29 AC142472.1-201ENST00000612013 1741 ntBASIC26.39■■□□□ 1.81
SMIM28A0A1B0GU29 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms