Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
LIMCH1Q9UPQ0 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.99■□□□□ 0.95
LIMCH1Q9UPQ0 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC20.99■□□□□ 0.95
LIMCH1Q9UPQ0 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIMCH1Q9UPQ0 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 TPR-209ENST00000613151 2478 ntTSL 5 BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 PCDHA12-202ENST00000613593 2588 ntBASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.98■□□□□ 0.95
LIMCH1Q9UPQ0 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 IGHGP-201ENST00000390555 1178 ntBASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 AC117947.1-201ENST00000427448 529 ntBASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMCH1Q9UPQ0 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LIMCH1Q9UPQ0 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMCH1Q9UPQ0 AC009053.2-201ENST00000563701 2365 ntBASIC20.96■□□□□ 0.95
LIMCH1Q9UPQ0 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LIMCH1Q9UPQ0 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMCH1Q9UPQ0 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
LIMCH1Q9UPQ0 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMCH1Q9UPQ0 MIR662-201ENST00000384847 95 ntBASIC20.96■□□□□ 0.95
LIMCH1Q9UPQ0 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LIMCH1Q9UPQ0 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.96■□□□□ 0.95
LIMCH1Q9UPQ0 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC20.96■□□□□ 0.95
LIMCH1Q9UPQ0 AC073912.3-201ENST00000624414 853 ntBASIC20.96■□□□□ 0.95
LIMCH1Q9UPQ0 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.96■□□□□ 0.95
LIMCH1Q9UPQ0 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMCH1Q9UPQ0 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMCH1Q9UPQ0 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC20.96■□□□□ 0.95
LIMCH1Q9UPQ0 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMCH1Q9UPQ0 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 DDT-203ENST00000403754 569 ntTSL 3 BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 DDT-206ENST00000430101 573 ntTSL 2 BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 AP003733.1-201ENST00000491725 852 ntBASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
LIMCH1Q9UPQ0 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms