Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VPS28Q9UK41 NUS1P2-201ENST00000417358 873 ntBASIC18.33■□□□□ 0.52
VPS28Q9UK41 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS28Q9UK41 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.33■□□□□ 0.52
VPS28Q9UK41 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.33■□□□□ 0.52
VPS28Q9UK41 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS28Q9UK41 DUTP2-201ENST00000519164 463 ntBASIC18.33■□□□□ 0.52
VPS28Q9UK41 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.33■□□□□ 0.52
VPS28Q9UK41 AL691432.3-201ENST00000621860 400 ntBASIC18.33■□□□□ 0.52
VPS28Q9UK41 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS28Q9UK41 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS28Q9UK41 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.52
VPS28Q9UK41 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS28Q9UK41 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS28Q9UK41 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS28Q9UK41 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VPS28Q9UK41 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS28Q9UK41 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.33■□□□□ 0.52
VPS28Q9UK41 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.33■□□□□ 0.52
VPS28Q9UK41 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS28Q9UK41 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS28Q9UK41 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS28Q9UK41 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
VPS28Q9UK41 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS28Q9UK41 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS28Q9UK41 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS28Q9UK41 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
VPS28Q9UK41 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
VPS28Q9UK41 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS28Q9UK41 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS28Q9UK41 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS28Q9UK41 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS28Q9UK41 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS28Q9UK41 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS28Q9UK41 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.32■□□□□ 0.52
VPS28Q9UK41 TSPY19P-201ENST00000418461 509 ntBASIC18.32■□□□□ 0.52
VPS28Q9UK41 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.32■□□□□ 0.52
VPS28Q9UK41 TSPY18P-201ENST00000441642 509 ntBASIC18.32■□□□□ 0.52
VPS28Q9UK41 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.32■□□□□ 0.52
VPS28Q9UK41 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS28Q9UK41 AC096582.2-201ENST00000510860 516 ntBASIC18.32■□□□□ 0.52
VPS28Q9UK41 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS28Q9UK41 AC091304.2-201ENST00000564639 760 ntBASIC18.32■□□□□ 0.52
VPS28Q9UK41 AC111152.3-201ENST00000569699 673 ntBASIC18.32■□□□□ 0.52
VPS28Q9UK41 AL732292.2-201ENST00000609649 430 ntBASIC18.32■□□□□ 0.52
VPS28Q9UK41 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.32■□□□□ 0.52
VPS28Q9UK41 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.32■□□□□ 0.52
VPS28Q9UK41 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
VPS28Q9UK41 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS28Q9UK41 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS28Q9UK41 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS28Q9UK41 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS28Q9UK41 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS28Q9UK41 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS28Q9UK41 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
VPS28Q9UK41 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.31■□□□□ 0.52
VPS28Q9UK41 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS28Q9UK41 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
VPS28Q9UK41 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS28Q9UK41 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.31■□□□□ 0.52
VPS28Q9UK41 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS28Q9UK41 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS28Q9UK41 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
VPS28Q9UK41 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.31■□□□□ 0.52
VPS28Q9UK41 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
VPS28Q9UK41 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS28Q9UK41 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
VPS28Q9UK41 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS28Q9UK41 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS28Q9UK41 KRT18P31-201ENST00000506277 1292 ntBASIC18.31■□□□□ 0.52
VPS28Q9UK41 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS28Q9UK41 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.31■□□□□ 0.52
VPS28Q9UK41 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS28Q9UK41 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS28Q9UK41 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
VPS28Q9UK41 BNIP3P18-201ENST00000593976 575 ntBASIC18.31■□□□□ 0.52
VPS28Q9UK41 LINC01711-201ENST00000598340 967 ntBASIC18.31■□□□□ 0.52
VPS28Q9UK41 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.31■□□□□ 0.52
VPS28Q9UK41 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC18.31■□□□□ 0.52
VPS28Q9UK41 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
VPS28Q9UK41 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS28Q9UK41 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS28Q9UK41 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS28Q9UK41 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS28Q9UK41 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
VPS28Q9UK41 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
VPS28Q9UK41 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS28Q9UK41 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS28Q9UK41 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS28Q9UK41 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
VPS28Q9UK41 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS28Q9UK41 AC067852.2-201ENST00000590513 2313 ntBASIC18.31■□□□□ 0.52
VPS28Q9UK41 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS28Q9UK41 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS28Q9UK41 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS28Q9UK41 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS28Q9UK41 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.3■□□□□ 0.52
VPS28Q9UK41 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS28Q9UK41 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
VPS28Q9UK41 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms