Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 OR7E47P-204ENST00000575924 449 ntBASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 METTL23-205ENST00000588302 925 ntTSL 5 BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 AC027612.4-201ENST00000605371 583 ntBASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 ORC5-208ENST00000626700 344 ntTSL 3 BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 AC010507.1-201ENST00000633895 436 ntBASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 ATP6V0CP3-201ENST00000417255 467 ntBASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 PUS1-205ENST00000535067 838 ntTSL 3 BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 AC018445.3-201ENST00000624177 1945 ntBASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RTFDC1Q9BY42 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 MRPL20P1-201ENST00000400819 433 ntBASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 STK25P1-201ENST00000585406 838 ntBASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 AQP6-205ENST00000618286 829 ntTSL 5 BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 AC004877.2-201ENST00000623941 599 ntBASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
RTFDC1Q9BY42 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RTFDC1Q9BY42 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RTFDC1Q9BY42 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RTFDC1Q9BY42 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
RTFDC1Q9BY42 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RTFDC1Q9BY42 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC21.48■■□□□ 1.03
RTFDC1Q9BY42 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RTFDC1Q9BY42 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RTFDC1Q9BY42 PC-214ENST00000628663 1470 ntTSL 5 BASIC21.48■■□□□ 1.03
RTFDC1Q9BY42 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RTFDC1Q9BY42 PNMT-202ENST00000394246 821 ntTSL 2 BASIC21.48■■□□□ 1.03
RTFDC1Q9BY42 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RTFDC1Q9BY42 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC21.48■■□□□ 1.03
RTFDC1Q9BY42 KRT19P2-202ENST00000557173 1012 ntBASIC21.48■■□□□ 1.03
RTFDC1Q9BY42 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC21.48■■□□□ 1.03
RTFDC1Q9BY42 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC21.48■■□□□ 1.03
RTFDC1Q9BY42 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
RTFDC1Q9BY42 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RTFDC1Q9BY42 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
RTFDC1Q9BY42 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RTFDC1Q9BY42 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RTFDC1Q9BY42 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
RTFDC1Q9BY42 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 163.6 ms